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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion
MultiLoc:mitochondrion
TargetP:mitochondrion
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G002680.2
HORVU1Hr1G023500.9
HORVU1Hr1G028520.1
HORVU1Hr1G028870.1
HORVU1Hr1G047990.4
HORVU1Hr1G069080.4
HORVU1Hr1G072070.1
HORVU1Hr1G082010.3
HORVU1Hr1G093680.1
HORVU1Hr1G093720.5
HORVU1Hr1G095120.1
HORVU2Hr1G005680.1
HORVU2Hr1G006030.4
HORVU2Hr1G063710.1
HORVU2Hr1G063720.1
HORVU2Hr1G067170.1
HORVU2Hr1G078290.3
HORVU2Hr1G093180.1
HORVU3Hr1G018940.2
HORVU3Hr1G030760.2
HORVU3Hr1G044700.1
HORVU3Hr1G052820.4
HORVU3Hr1G069970.2
HORVU3Hr1G077280.2
HORVU3Hr1G077290.1
HORVU3Hr1G086830.7
HORVU3Hr1G094550.2
HORVU3Hr1G108010.6
HORVU4Hr1G007060.2
HORVU4Hr1G058460.1
HORVU5Hr1G029200.4
HORVU5Hr1G112790.2
HORVU6Hr1G009670.1
HORVU6Hr1G034030.2
HORVU6Hr1G054760.4
HORVU7Hr1G075380.6
HORVU7Hr1G075700.2
HORVU7Hr1G081290.4
HORVU7Hr1G094010.8
HORVU7Hr1G094050.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 HORVU1Hr1G023500.9 AT1G09330.1 21798944
AT4G11220.1 HORVU1Hr1G028870.1 AT3G59500.1 21798944
AT4G11220.1 HORVU6Hr1G034030.2 AT3G59500.1 21798944
AT4G11220.1 HORVU7Hr1G094010.8 AT3G59500.1 21798944
AT4G11220.1 HORVU7Hr1G094050.2 AT3G59500.1 21798944
AT5G41600.1 HORVU1Hr1G028520.1 AT1G55190.1 21798944
AT5G41600.1 HORVU3Hr1G018940.2 AT1G55190.1 21798944
AT5G41600.1 HORVU1Hr1G069080.4 AT1G77350.1 21798944
AT5G41600.1 HORVU3Hr1G108010.6 AT2G03120.1 21798944
AT5G41600.1 HORVU6Hr1G009670.1 AT2G03120.1 21798944
AT5G41600.1 HORVU2Hr1G078290.3 AT2G39960.1 21798944
AT5G41600.1 HORVU4Hr1G058460.1 AT2G39960.1 21798944
AT5G41600.1 HORVU2Hr1G005680.1 AT2G46890.1 21798944
AT5G41600.1 HORVU2Hr1G093180.1 AT2G46890.1 21798944
AT5G41600.1 HORVU1Hr1G093680.1 AT3G02420.1 21798944
AT5G41600.1 HORVU1Hr1G093720.5 AT3G02420.1 21798944
AT5G41600.1 HORVU1Hr1G095120.1 AT3G02420.1 21798944
AT5G41600.1 HORVU2Hr1G063710.1 AT3G02420.1 21798944
AT5G41600.1 HORVU2Hr1G063720.1 AT3G02420.1 21798944
AT5G41600.1 HORVU2Hr1G067170.1 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G044700.1 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G052820.4 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G077280.2 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G077290.1 AT3G02420.1 21798944
AT5G41600.1 HORVU4Hr1G007060.2 AT3G02420.1 21798944
AT5G41600.1 HORVU5Hr1G029200.4 AT3G02420.1 21798944
AT5G41600.1 HORVU6Hr1G054760.4 AT3G02420.1 21798944
AT5G41600.1 HORVU0Hr1G002680.2 AT3G07950.1 21798944
AT5G41600.1 HORVU2Hr1G006030.4 AT3G07950.1 21798944
AT5G41600.1 HORVU3Hr1G094550.2 AT3G27080.1 21798944
AT5G41600.1 HORVU7Hr1G075380.6 AT3G27080.1 21798944
AT5G41600.1 HORVU1Hr1G072070.1 AT3G46060.1 21798944
AT5G41600.1 HORVU3Hr1G086830.7 AT3G46060.1 21798944
AT5G41600.1 HORVU5Hr1G112790.2 AT3G46060.1 21798944
AT5G41600.1 HORVU1Hr1G028870.1 AT3G59500.1 21798944
AT5G41600.1 HORVU6Hr1G034030.2 AT3G59500.1 21798944
AT5G41600.1 HORVU7Hr1G094010.8 AT3G59500.1 21798944
AT5G41600.1 HORVU7Hr1G094050.2 AT3G59500.1 21798944
AT5G41600.1 HORVU1Hr1G082010.3 AT5G41600.1 21798944
AT5G41600.1 HORVU3Hr1G030760.2 AT5G41600.1 21798944
AT5G41600.1 HORVU3Hr1G069970.2 AT5G41600.1 21798944
AT5G41600.1 HORVU7Hr1G075700.2 AT5G41600.1 21798944
AT5G41600.1 HORVU7Hr1G081290.4 AT5G41600.1 21798944
AT5G41600.1 HORVU1Hr1G047990.4 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 85.33 98.46
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 85.33 98.46
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 84.0 96.92
HORVU7Hr1G081290.4 Barley plastid 74.0 96.1
Os06t0503400-01 Rice plasma membrane 72.33 81.89
EER89811 Sorghum peroxisome 69.0 80.86
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 68.0 78.16
Solyc03g007740.2.1 Tomato nucleus 44.67 52.55
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 44.0 52.38
KRH41254 Soybean cytosol, nucleus, plasma membrane 44.0 51.97
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 43.33 51.59
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 43.67 51.37
CDY13240 Canola cytosol, peroxisome, plasma membrane 27.33 50.93
KRH59988 Soybean mitochondrion 43.0 50.79
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 42.67 50.59
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 43.0 50.59
Solyc01g095200.2.1 Tomato plastid 44.33 50.57
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 42.0 50.2
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 42.33 50.2
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 44.33 50.19
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 41.67 49.8
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 41.67 49.8
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 44.67 49.63
CDY38194 Canola cytosol, nucleus, plasma membrane 41.33 49.6
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 44.33 49.26
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 41.0 49.2
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 41.67 49.02
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 41.33 48.63
CDX79993 Canola cytosol, peroxisome, plasma membrane 40.67 48.61
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 40.67 48.61
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 40.33 48.4
CDX90792 Canola cytosol, peroxisome, plasma membrane 43.0 48.31
Bra000739.1-P Field mustard cytosol 42.67 47.94
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 42.0 47.91
KRH40357 Soybean endoplasmic reticulum 41.0 47.86
CDY42012 Canola cytosol, peroxisome, plasma membrane 40.0 47.81
AT4G11220.1 Thale cress nucleus 43.0 47.6
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 39.33 47.2
KRG99174 Soybean endoplasmic reticulum, plasma membrane 13.67 47.13
Bra019285.1-P Field mustard cytosol 42.0 47.01
CDY57657 Canola cytosol, nucleus, plasma membrane 43.0 46.91
Bra010539.1-P Field mustard cytosol 42.0 46.84
Bra013717.1-P Field mustard nucleus 43.0 46.74
KRH00872 Soybean endoplasmic reticulum 40.33 46.72
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 40.0 46.69
CDY10954 Canola cytosol 42.0 46.67
AT4G23630.2 Thale cress nucleus 42.67 46.55
KRH06560 Soybean endoplasmic reticulum 39.67 46.48
CDY24806 Canola cytosol 42.33 46.35
CDY52012 Canola cytosol, peroxisome, plasma membrane 39.0 46.06
CDY44123 Canola cytosol, nucleus, plasma membrane 42.33 46.01
CDY41666 Canola cytosol 42.0 45.65
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 38.0 44.88
CDY53913 Canola cytosol, peroxisome, plasma membrane 38.0 44.88
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 38.0 44.88
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 38.0 44.71
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 37.67 44.66
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 39.67 43.91
KRH35223 Soybean cytosol, nucleus, plasma membrane 35.0 42.0
CDY05135 Canola mitochondrion 43.0 41.21
HORVU3Hr1G030760.2 Barley mitochondrion 42.33 40.45
KRH48008 Soybean cytosol, peroxisome, plasma membrane 42.0 40.13
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 34.67 39.85
HORVU1Hr1G017470.2 Barley cytosol, endoplasmic reticulum, nucleus 32.67 39.68
CDY48510 Canola cytosol 31.33 38.68
Bra037369.1-P Field mustard cytosol 31.33 38.68
CDY07184 Canola cytosol, peroxisome, plasma membrane 31.33 38.68
AT4G01230.2 Thale cress cytosol 30.0 36.89
HORVU3Hr1G064240.2 Barley plasma membrane 26.67 36.53
HORVU5Hr1G101680.2 Barley cytosol, endoplasmic reticulum, peroxisome 31.0 35.63
CDY62522 Canola cytosol 9.33 35.0
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 21.0 35.0
Bra035242.1-P Field mustard cytosol 22.33 33.5
VIT_02s0025g00590.t01 Wine grape mitochondrion 6.67 33.33
CDX86802 Canola cytosol, nucleus, peroxisome 26.33 32.24
KRG91601 Soybean mitochondrion 36.33 32.06
HORVU4Hr1G050020.1 Barley plastid 25.67 29.73
CDX89122 Canola extracellular, mitochondrion 15.0 29.41
HORVU1Hr1G083110.3 Barley plastid 28.33 29.11
HORVU2Hr1G122310.2 Barley cytosol, plasma membrane 15.67 25.27
HORVU2Hr1G060770.16 Barley plasma membrane 30.67 24.02
HORVU3Hr1G008400.1 Barley cytosol, peroxisome 24.67 21.26
Protein Annotations
EnsemblPlants:HORVU7Hr1G075700.2EnsemblPlantsGene:HORVU7Hr1G075700GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388InterPro:Reticulon
PANTHER:PTHR10994PANTHER:PTHR10994:SF73PFAM:PF02453PFscan:PS50845SEG:segTMHMM:TMhelix
UniParc:UPI000B464F85UniProt:A0A287WYB4MapMan:13.7.2.1:::
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287WYB4]
Coordinates
chrchr7H:-:440018041..440037045
Molecular Weight (calculated)
32730.0 Da
IEP (calculated)
9.362
GRAVY (calculated)
-0.013
Length
300 amino acids
Sequence
(BLAST)
001: PERKRQARRT LPPHTLRALR EQRTRGEPVL TFPVAPFAPS MADPAEETVA APPPTPAAPA EGAPPLSAEP PASADASPEK AAPPASAPDT TVRSRGFRLL
101: GEDTSVHKVL GGGKTADVLL WKDKKTTAVV IGGTTVIWVL FEVLDYHLLT LLSHVMIGVL AILFVWSKAM TFIKKSPPDI PVVEIPEDLA VNVSRALRND
201: VNRSLHLFRE IAMGHDLKKF LGVIAGLWVL SEVGSCCDFL TLIYIAVLMI HTVPILYDKY QDKVDHFAGK AHTEACKHYE VLDQKVLSKI PRGPAKTKKT
Best Arabidopsis Sequence Match ( AT1G64090.1 )
(BLAST)
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.