Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 93.1 | 93.1 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 91.95 | 92.66 |
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 91.57 | 92.28 |
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 77.78 | 82.19 |
| Zm00001d034313_P001 | Maize | cytosol, nucleus, plasma membrane | 77.78 | 81.85 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 77.01 | 81.38 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 57.09 | 60.08 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 55.94 | 59.59 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 55.94 | 58.87 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 54.02 | 58.26 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 53.64 | 57.61 |
| KRH73588 | Soybean | plasma membrane | 54.02 | 57.55 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 53.64 | 55.12 |
| Solyc12g006290.1.1 | Tomato | nucleus | 48.28 | 54.08 |
| KRG99024 | Soybean | plasma membrane | 54.02 | 53.41 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 27.97 | 51.41 |
| Bra029827.1-P | Field mustard | plasma membrane | 45.98 | 50.21 |
| CDY00916 | Canola | plasma membrane | 45.98 | 50.21 |
| CDY08616 | Canola | plasma membrane | 45.98 | 50.21 |
| AT3G10260.3 | Thale cress | plasma membrane | 48.28 | 47.19 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 51.34 | 44.67 |
| HORVU2Hr1G060770.16 | Barley | plasma membrane | 62.45 | 42.56 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 41.0 | 41.96 |
| HORVU1Hr1G017470.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 35.63 | 37.65 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 34.48 | 36.29 |
| CDY56712 | Canola | mitochondrion | 47.13 | 34.65 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 33.33 | 33.33 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 39.85 | 33.12 |
| HORVU7Hr1G081290.4 | Barley | plastid | 29.12 | 32.9 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 26.82 | 31.96 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 35.63 | 31.0 |
| HORVU1Hr1G083110.3 | Barley | plastid | 27.2 | 24.32 |
| HORVU4Hr1G050020.1 | Barley | plastid | 23.37 | 23.55 |
| HORVU2Hr1G122310.2 | Barley | cytosol, plasma membrane | 14.56 | 20.43 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 26.82 | 20.11 |
Protein Annotations
| EMBL:AK376288 | EnsemblPlants:HORVU5Hr1G101680.2 | EnsemblPlantsGene:HORVU5Hr1G101680 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 |
| InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF62 | PFAM:PF02453 | PFscan:PS50845 | TMHMM:TMhelix |
| UniParc:UPI0002008CF2 | UniProt:F2EJG1 | MapMan:13.7.2.1 | : | : | : |
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F2EJG1]
Coordinates
chrchr5H:+:612995245..612998701
Molecular Weight (calculated)
29373.9 Da
IEP (calculated)
9.498
GRAVY (calculated)
0.044
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMSEHSEST AEKLMGNIMD TIADKLPKQK SDNIMSNIMD TIADKLPKQK SGRFDPGSVS ENMKNKMFGR QKTLHGVLGG GKSADVLLWR NKKISSSVLG
101: LATVIWVFFE WLDYHFLTII SFALVLGMVV QFVWSNFSKS SDVPRVKLPE DLFVNIAVAI GAQVNKFLGF LQDVSCERNL KHFVLAIVGL WAASVAGSWF
201: NLLTVIYIGF VCAHTLPVLY EKYEDQVDDF LYNILGLLRD QYQKLDSGVL RRIPKGNKKS E
101: LATVIWVFFE WLDYHFLTII SFALVLGMVV QFVWSNFSKS SDVPRVKLPE DLFVNIAVAI GAQVNKFLGF LQDVSCERNL KHFVLAIVGL WAASVAGSWF
201: NLLTVIYIGF VCAHTLPVLY EKYEDQVDDF LYNILGLLRD QYQKLDSGVL RRIPKGNKKS E
001: MKSTFICKLS NLRFRLCFRI MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA
101: TAIWVLFEWI NFHFLSLVCY ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG
201: SCCNFLTVLY IGFVGAHTMP VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: TAIWVLFEWI NFHFLSLVCY ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG
201: SCCNFLTVLY IGFVGAHTMP VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.