Factsheet for Bra029827.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08616	Canola	plasma membrane	100.0	100.0
AT3G10260.3	Thale cress	plasma membrane	85.77	76.78
Solyc12g006290.1.1	Tomato	nucleus	58.16	59.66
Solyc07g044880.2.1	Tomato	mitochondrion	35.15	59.15
KRH14529	Soybean	cytosol, peroxisome, plasma membrane	58.16	56.73
VIT_12s0028g01090.t01	Wine grape	cytosol, peroxisome, plasma membrane	58.58	56.45
KRH45979	Soybean	cytosol, nucleus, plasma membrane	56.9	55.97
KRH73588	Soybean	plasma membrane	57.32	55.92
PGSC0003DMT400002449	Potato	cytosol, nucleus, plasma membrane	58.58	55.12
GSMUA_Achr6P04560_001	Banana	cytosol, peroxisome, plasma membrane	54.39	52.42
GSMUA_Achr9P10200_001	Banana	cytosol, peroxisome, plasma membrane	52.3	51.65
KRG99024	Soybean	plasma membrane	56.07	50.76
Zm00001d034313_P001	Maize	cytosol, nucleus, plasma membrane	52.3	50.4
Os03t0781700-01	Rice	cytosol, peroxisome, plasma membrane	51.46	49.8
EER90788	Sorghum	cytosol, nucleus, plasma membrane	51.05	49.39
Os07t0142000-01	Rice	plasma membrane	49.79	48.37
TraesCS2D01G254800.1	Wheat	cytosol, peroxisome, vacuole	49.79	48.18
TraesCS5B01G420300.1	Wheat	cytosol, nucleus, plasma membrane	51.46	47.49
PGSC0003DMT400074138	Potato	plasma membrane	59.41	47.33
TraesCS5D01G426200.1	Wheat	cytosol, peroxisome, plasma membrane	51.05	47.1
TraesCS5A01G418200.1	Wheat	cytosol, peroxisome, plasma membrane	51.05	46.74
TraesCS2B01G267800.2	Wheat	cytosol, peroxisome, vacuole	48.12	46.56
TraesCS2A01G254300.1	Wheat	cytosol, peroxisome, vacuole	47.7	46.15
HORVU5Hr1G101680.2	Barley	cytosol, endoplasmic reticulum, peroxisome	50.21	45.98
Zm00001d018781_P001	Maize	extracellular, mitochondrion	45.19	44.44
Bra004562.1-P	Field mustard	cytosol, peroxisome, plasma membrane	41.0	39.04
KXG34376	Sorghum	plasma membrane	49.79	37.9
Bra003455.1-P	Field mustard	cytosol, peroxisome, plasma membrane	40.17	37.8
Bra037594.1-P	Field mustard	plasma membrane	34.31	36.61
Bra027678.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	35.98	34.26
Bra037369.1-P	Field mustard	cytosol	34.73	34.16
Bra027757.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	35.56	34.0
Bra000739.1-P	Field mustard	cytosol	37.66	33.71
Bra013717.1-P	Field mustard	nucleus	38.49	33.33
Bra019285.1-P	Field mustard	cytosol	37.24	33.21
Bra010539.1-P	Field mustard	cytosol	36.82	32.71
Bra001748.1-P	Field mustard	plastid	25.1	30.61
HORVU2Hr1G060770.16	Barley	plasma membrane	47.7	29.77
Bra034153.1-P	Field mustard	plasma membrane	26.78	28.7
Bra003171.1-P	Field mustard	plasma membrane	24.27	28.57
Bra007047.1-P	Field mustard	golgi, plasma membrane, vacuole	23.85	27.8
Bra004291.1-P	Field mustard	plasma membrane	24.27	27.49
Bra040612.1-P	Field mustard	plasma membrane	20.92	27.32
Bra029878.1-P	Field mustard	cytosol, peroxisome, plasma membrane	27.2	27.2
Bra022426.1-P	Field mustard	cytosol, plasma membrane, plastid	27.62	27.05
Bra035242.1-P	Field mustard	cytosol	22.18	26.5
Bra039207.1-P	Field mustard	plasma membrane	17.99	20.67
Bra033951.1-P	Field mustard	plasma membrane	23.01	18.21

Protein Annotations

EnsemblPlants:Bra029827.1	EnsemblPlants:Bra029827.1-P	EnsemblPlantsGene:Bra029827	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388
InterPro:Reticulon	PANTHER:PTHR10994	PANTHER:PTHR10994:SF62	PFAM:PF02453	PFscan:PS50845	TMHMM:TMhelix
UniParc:UPI000254795E	UniProt:M4EM07	MapMan:13.7.2.1	:	:	:

Description

AT3G10260 (E=5e-110) | reticulon family protein

Coordinates

chrA05:+:22127871..22129064

Molecular Weight (calculated)

26971.0 Da

IEP (calculated)

8.730

GRAVY (calculated)

0.193

Length

239 amino acids

Sequence
(BLAST)

001: MPEKNIVEEA IGDLVDNFTD AVQKNKHDTV ASRFNRLFGR EKPIHHVLGG GRSADVLLWR NKKISASFLM GATAIWVLFE WINLHFLSLV CYGLLLGMIA
101: QFVWCNASGF LNRSQSRVPR LVLPKDFFAD VGVTIGTEVN RGLLFLQDLS CRGNLKQFLM AVFGLWITAI IGSCCNFLTV LYIGFVGAHT MPVVYERYED
201: EVDGFVDSLL MKFHSHYKKI DSGFLSRIPS GKFGMKKHD

Best Arabidopsis Sequence Match ( AT3G10260.1 )
(BLAST)

001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE

Arabidopsis Description

Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.