Factsheet for Bra039207.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
peroxisome 1
plastid 1
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	peroxisome, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46067	Canola	plasma membrane	100.0	100.0
CDX76854	Canola	plasma membrane	94.71	95.17
AT2G23640.1	Thale cress	cytosol, peroxisome, plasma membrane	75.0	75.73
VIT_00s0253g00030.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	41.83	40.65
KRH28521	Soybean	endoplasmic reticulum	35.1	34.43
KRH76938	Soybean	endoplasmic reticulum, plasma membrane	25.48	32.92
PGSC0003DMT400026113	Potato	plasma membrane, plastid	36.06	30.74
Solyc02g090370.2.1	Tomato	plasma membrane	27.4	30.48
Bra040612.1-P	Field mustard	plasma membrane	19.71	22.4
Bra003455.1-P	Field mustard	cytosol, peroxisome, plasma membrane	26.92	22.05
Bra001748.1-P	Field mustard	plastid	20.67	21.94
Bra037594.1-P	Field mustard	plasma membrane	23.56	21.88
Bra004562.1-P	Field mustard	cytosol, peroxisome, plasma membrane	25.96	21.51
Bra022426.1-P	Field mustard	cytosol, plasma membrane, plastid	24.04	20.49
Bra004291.1-P	Field mustard	plasma membrane	20.67	20.38
Bra027678.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	24.04	19.92
Bra034153.1-P	Field mustard	plasma membrane	21.15	19.73
Bra027757.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	23.08	19.2
Bra003171.1-P	Field mustard	plasma membrane	18.27	18.72
Bra007047.1-P	Field mustard	golgi, plasma membrane, vacuole	18.27	18.54
Bra013717.1-P	Field mustard	nucleus	24.52	18.48
Bra029878.1-P	Field mustard	cytosol, peroxisome, plasma membrane	21.15	18.41
Bra019285.1-P	Field mustard	cytosol	23.56	18.28
Bra029827.1-P	Field mustard	plasma membrane	20.67	17.99
Bra000739.1-P	Field mustard	cytosol	23.08	17.98
Bra010539.1-P	Field mustard	cytosol	23.08	17.84
Bra037369.1-P	Field mustard	cytosol	18.27	15.64
Bra035242.1-P	Field mustard	cytosol	14.42	15.0
Bra033951.1-P	Field mustard	plasma membrane	17.31	11.92

Protein Annotations

MapMan:13.7.2.1	EnsemblPlantsGene:Bra039207	EnsemblPlants:Bra039207.1	EnsemblPlants:Bra039207.1-P	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0071458	GO:GO:0071782
GO:GO:0071786	InterPro:IPR003388	UniProt:M4FDN6	PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994
PANTHER:PTHR10994:SF86	InterPro:Reticulon	TMHMM:TMhelix	UniParc:UPI0002542E6B	:	:

Description

AT2G23640 (E=3e-089) | reticulon family protein (RTNLB13)

Coordinates

chrA09:-:31510095..31511394

Molecular Weight (calculated)

23846.1 Da

IEP (calculated)

9.015

GRAVY (calculated)

0.016

Length

208 amino acids

Sequence
(BLAST)

001: MANDVSKDTS PKSEDTTLED IYLWRRKKLA FSVLLVSTAT WVLINIYGFS SITIVSWAAM AIVSMVFLWG SLLRLLSKVE PDLSGLEVSD EFVAEMARSC
101: RKLMEEMVGW MFTVGAESEW FVFAKTILGF WILSRIGNLL DFHTFLFIGL VIGLTVPKLW EKHGDRLQKL SRNLKDRSNE AYDNSREKIL KMKNKLQHGT
201: EDKVKKAE

Best Arabidopsis Sequence Match ( AT2G23640.1 )
(BLAST)

001: MANDVTKDPT PKSDIVEDIY LWRRKKLAFS TLLVSTSTWI LLSFYGFTTI TIVSWIGIAV VSMIFLWGSL LRLLSKVEPE LSGLEVSEEF VVETVRSCRM
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE

Arabidopsis Description

RTNLB13Reticulon-like protein B13 [Source:UniProtKB/Swiss-Prot;Acc:O64837]
SUBAcon: [cytosol,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.