CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
peroxisome 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	peroxisome, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039207.1-P	Field mustard	plasma membrane	100.0	100.0
CDX76854	Canola	plasma membrane	94.71	95.17
AT2G23640.1	Thale cress	cytosol, peroxisome, plasma membrane	75.0	75.73
VIT_00s0253g00030.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	41.83	40.65
KRH28521	Soybean	endoplasmic reticulum	35.1	34.43
KRH76938	Soybean	endoplasmic reticulum, plasma membrane	25.48	32.92
PGSC0003DMT400026113	Potato	plasma membrane, plastid	36.06	30.74
Solyc02g090370.2.1	Tomato	plasma membrane	27.4	30.48
CDY13240	Canola	cytosol, peroxisome, plasma membrane	18.75	24.22
CDY66516	Canola	endoplasmic reticulum, extracellular	21.63	24.19
CDY46172	Canola	plastid	23.08	23.76
CDX82294	Canola	plastid	21.15	22.45
CDY22970	Canola	plasma membrane	21.15	22.45
CDX75962	Canola	plasma membrane	24.04	22.32
CDY51936	Canola	endoplasmic reticulum, peroxisome, plasma membrane	24.04	22.32
CDX99221	Canola	plasma membrane	21.63	22.17
CDY53913	Canola	cytosol, peroxisome, plasma membrane	26.92	22.05
CDY52012	Canola	cytosol, peroxisome, plasma membrane	26.92	22.05
CDY22971	Canola	plasma membrane	20.67	21.94
CDY67571	Canola	plasma membrane	23.56	21.88
CDX71213	Canola	plasma membrane	21.15	21.67
CDY48222	Canola	cytosol, endoplasmic reticulum, plasma membrane	21.15	21.67
CDX79993	Canola	cytosol, peroxisome, plasma membrane	25.96	21.51
CDY42012	Canola	cytosol, peroxisome, plasma membrane	25.48	21.12
CDY08353	Canola	cytosol, endoplasmic reticulum, nucleus	25.0	20.8
CDX96038	Canola	plasma membrane	20.67	20.38
CDY36282	Canola	plasma membrane	21.63	20.18
CDY25557	Canola	cytosol, endoplasmic reticulum, nucleus	24.04	19.92
CDY34396	Canola	cytosol, endoplasmic reticulum, nucleus	24.04	19.92
CDY38194	Canola	cytosol, nucleus, plasma membrane	23.56	19.6
CDY01898	Canola	plasma membrane	19.71	19.34
CDY41666	Canola	cytosol	25.48	19.2
CDX89122	Canola	extracellular, mitochondrion	13.94	18.95
CDY00975	Canola	cytosol, endoplasmic reticulum, peroxisome	21.63	18.83
CDX67589	Canola	golgi, plasma membrane, vacuole	18.27	18.72
CDY24806	Canola	cytosol	24.52	18.61
CDY57657	Canola	cytosol, nucleus, plasma membrane	24.52	18.55
CDX78209	Canola	golgi, plasma membrane, vacuole	18.27	18.54
CDY10954	Canola	cytosol	24.04	18.52
CDY08567	Canola	cytosol	21.15	18.26
CDY44123	Canola	cytosol, nucleus, plasma membrane	24.04	18.12
CDX73507	Canola	cytosol, golgi, plasma membrane	17.79	18.05
CDY00916	Canola	plasma membrane	20.67	17.99
CDY08616	Canola	plasma membrane	20.67	17.99
CDX90792	Canola	cytosol, peroxisome, plasma membrane	23.08	17.98
CDY51584	Canola	plasma membrane	17.31	17.73
CDX86802	Canola	cytosol, nucleus, peroxisome	20.67	17.55
CDY62522	Canola	cytosol	6.73	17.5
CDX81500	Canola	plasma membrane	16.83	16.83
CDY07184	Canola	cytosol, peroxisome, plasma membrane	18.75	16.05
CDY48510	Canola	cytosol	18.27	15.64
CDY05135	Canola	mitochondrion	23.08	15.34
CDX82165	Canola	endoplasmic reticulum, peroxisome, plasma membrane, plastid	17.31	14.52
CDY56712	Canola	mitochondrion	21.63	12.68
CDY12701	Canola	plasma membrane	17.31	11.92

Protein Annotations

MapMan:13.7.2.1	GO:A0A078I7K8	UniProt:A0A078I7K8	EnsemblPlants:CDY46067	ProteinID:CDY46067	ProteinID:CDY46067.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00083215001	InterPro:IPR003388	PFAM:PF02453
PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF86	InterPro:Reticulon	TMHMM:TMhelix	UniParc:UPI0002542E6B

Description

BnaA09g41910DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7K8]

Coordinates

chrLK032649:-:65010..68130

Molecular Weight (calculated)

23846.1 Da

IEP (calculated)

9.015

GRAVY (calculated)

0.016

Length

208 amino acids

Sequence
(BLAST)

001: MANDVSKDTS PKSEDTTLED IYLWRRKKLA FSVLLVSTAT WVLINIYGFS SITIVSWAAM AIVSMVFLWG SLLRLLSKVE PDLSGLEVSD EFVAEMARSC
101: RKLMEEMVGW MFTVGAESEW FVFAKTILGF WILSRIGNLL DFHTFLFIGL VIGLTVPKLW EKHGDRLQKL SRNLKDRSNE AYDNSREKIL KMKNKLQHGT
201: EDKVKKAE

Best Arabidopsis Sequence Match ( AT2G23640.1 )
(BLAST)

001: MANDVTKDPT PKSDIVEDIY LWRRKKLAFS TLLVSTSTWI LLSFYGFTTI TIVSWIGIAV VSMIFLWGSL LRLLSKVEPE LSGLEVSEEF VVETVRSCRM
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE

Arabidopsis Description

RTNLB13Reticulon-like protein B13 [Source:UniProtKB/Swiss-Prot;Acc:O64837]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.