Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 94.15 | 94.15 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 80.98 | 81.77 |
| CDY51584 | Canola | plasma membrane | 80.98 | 81.77 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 79.51 | 80.3 |
| KRH75801 | Soybean | plasma membrane | 55.12 | 54.07 |
| KRH66004 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 54.15 | 53.11 |
| VIT_08s0007g01720.t01 | Wine grape | plasma membrane | 53.66 | 52.63 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 49.27 | 48.33 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 48.29 | 47.37 |
| GSMUA_Achr10P... | Banana | plasma membrane | 44.88 | 40.0 |
| Os04t0367400-02 | Rice | plasma membrane | 36.59 | 35.21 |
| EES03891 | Sorghum | golgi, peroxisome, plasma membrane | 36.1 | 34.91 |
| GSMUA_Achr8P02250_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 41.95 | 34.82 |
| Zm00001d042846_P001 | Maize | plasma membrane | 35.61 | 34.76 |
| CDX82294 | Canola | plastid | 31.71 | 33.16 |
| CDY22971 | Canola | plasma membrane | 31.71 | 33.16 |
| OQU78555 | Sorghum | extracellular | 35.61 | 33.03 |
| CDY46172 | Canola | plastid | 32.2 | 32.67 |
| GSMUA_Achr6P33560_001 | Banana | plasma membrane | 41.95 | 32.58 |
| Os01t0851300-01 | Rice | golgi, plasma membrane, vacuole | 32.2 | 32.51 |
| CDX99221 | Canola | plasma membrane | 32.2 | 32.51 |
| CDY22970 | Canola | plasma membrane | 30.73 | 32.14 |
| Zm00001d039213_P001 | Maize | golgi, plasma membrane, plastid | 33.66 | 29.49 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 32.2 | 27.62 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 27.32 | 27.59 |
| CDX71213 | Canola | plasma membrane | 27.32 | 27.59 |
| CDY08567 | Canola | cytosol | 32.2 | 27.39 |
| CDY36282 | Canola | plasma membrane | 29.76 | 27.35 |
| CDY67571 | Canola | plasma membrane | 29.76 | 27.23 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 29.27 | 26.79 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 32.68 | 26.69 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 32.68 | 26.69 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 32.2 | 25.98 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 31.71 | 25.9 |
| CDX75962 | Canola | plasma membrane | 28.29 | 25.89 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.22 | 25.6 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 31.22 | 25.6 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 31.71 | 25.59 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.22 | 25.5 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 22.93 | 25.27 |
| CDY48510 | Canola | cytosol | 29.27 | 24.69 |
| CDX96038 | Canola | plasma membrane | 25.37 | 24.64 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 28.78 | 24.28 |
| CDY01898 | Canola | plasma membrane | 24.88 | 24.06 |
| CDY08616 | Canola | plasma membrane | 27.8 | 23.85 |
| CDY00916 | Canola | plasma membrane | 27.8 | 23.85 |
| CDY62522 | Canola | cytosol | 9.27 | 23.75 |
| CDX81500 | Canola | plasma membrane | 23.9 | 23.56 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 31.22 | 23.27 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 30.24 | 23.22 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 30.73 | 22.83 |
| CDY24806 | Canola | cytosol | 30.24 | 22.63 |
| CDY10954 | Canola | cytosol | 29.76 | 22.59 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 17.56 | 22.36 |
| CDY41666 | Canola | cytosol | 29.76 | 22.1 |
| CDY05135 | Canola | mitochondrion | 30.24 | 19.81 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 21.95 | 18.15 |
| CDY46067 | Canola | plasma membrane | 18.05 | 17.79 |
| CDX76854 | Canola | plasma membrane | 17.56 | 17.39 |
| CDX89122 | Canola | extracellular, mitochondrion | 12.68 | 16.99 |
| CDY56712 | Canola | mitochondrion | 29.27 | 16.9 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 20.0 | 16.73 |
| CDY12701 | Canola | plasma membrane | 23.9 | 16.23 |
Protein Annotations
| EnsemblPlants:CDX73507 | EnsemblPlantsGene:GSBRNA2T00109023001 | GO:A0A078C9H3 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF65 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDX73507 | ProteinID:CDX73507.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EE7172 | MapMan:13.7.2.1 | : | : | : |
Description
BnaC08g24960D
Coordinates
chrLK031799:+:778512..779496
Molecular Weight (calculated)
23137.8 Da
IEP (calculated)
8.197
GRAVY (calculated)
0.493
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMGSSLEKL FNKERTVHEI LGGGIVADVM LWRKKNASVG IVTVTIGSWM VFETFSYTIL TLLSSVLLLL LSILFLWSKS ASILNRPSPP LTEFQVSEAM
101: AEEASKLLRI HVNKLLQVSY DIAMGRDSEL FIKVAVYLFL IAFIGSIMDF QTLCHAGVLV VMAVPAFYER YEDCIDGSIV LLYNKAKELY LRFKIWAYPE
201: HKKLS
101: AEEASKLLRI HVNKLLQVSY DIAMGRDSEL FIKVAVYLFL IAFIGSIMDF QTLCHAGVLV VMAVPAFYER YEDCIDGSIV LLYNKAKELY LRFKIWAYPE
201: HKKLS
001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
Arabidopsis Description
RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.