Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000739.1-P | Field mustard | cytosol | 81.79 | 95.88 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 81.47 | 95.51 |
| AT4G11220.1 | Thale cress | nucleus | 76.04 | 87.82 |
| CDY24806 | Canola | cytosol | 71.89 | 82.12 |
| CDY10954 | Canola | cytosol | 70.29 | 81.48 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 71.57 | 81.45 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 41.85 | 81.37 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 71.57 | 81.16 |
| CDY41666 | Canola | cytosol | 69.97 | 79.35 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 54.31 | 67.46 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 54.31 | 66.93 |
| KRH59988 | Soybean | mitochondrion | 54.31 | 66.93 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 53.04 | 66.14 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 53.04 | 66.14 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 52.4 | 65.6 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 52.08 | 65.2 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 52.08 | 63.92 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 51.12 | 63.74 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 50.48 | 62.95 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 49.84 | 62.9 |
| Zm00001d012776_P001 | Maize | extracellular | 50.8 | 62.85 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 49.84 | 62.65 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 53.99 | 62.59 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 53.99 | 62.59 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 50.16 | 62.55 |
| Os01t0226300-01 | Rice | plasma membrane | 35.46 | 62.36 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 49.84 | 62.15 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 49.2 | 62.1 |
| TraesCS3A01G278800.1 | Wheat | golgi | 49.2 | 62.1 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 51.12 | 62.02 |
| Zm00001d043551_P003 | Maize | plasma membrane | 50.8 | 61.87 |
| Os05t0526400-01 | Rice | plasma membrane | 49.52 | 61.75 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 50.16 | 61.57 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 49.2 | 60.87 |
| Os01t0736900-01 | Rice | plasma membrane | 48.88 | 60.47 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 48.88 | 60.24 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 48.88 | 60.0 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 48.24 | 59.45 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 48.56 | 58.91 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 41.21 | 58.9 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 47.28 | 58.73 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 46.96 | 57.87 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 45.37 | 56.35 |
| CDY62522 | Canola | cytosol | 14.38 | 56.25 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 45.37 | 56.13 |
| Zm00001d020229_P001 | Maize | plasma membrane | 25.88 | 53.29 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 38.98 | 53.04 |
| Zm00001d016041_P001 | Maize | extracellular | 38.66 | 52.61 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 41.53 | 52.0 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 47.28 | 51.75 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 47.28 | 51.75 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 38.34 | 51.72 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 46.01 | 51.61 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 41.53 | 51.59 |
| Zm00001d020729_P001 | Maize | plasma membrane | 15.65 | 51.58 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 46.01 | 50.7 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 41.21 | 49.43 |
| EER89811 | Sorghum | peroxisome | 39.94 | 48.83 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 39.94 | 48.08 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 39.94 | 48.08 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 39.94 | 48.08 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 46.33 | 47.39 |
| Os06t0503400-01 | Rice | plasma membrane | 39.94 | 47.17 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 39.3 | 47.13 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 36.42 | 46.91 |
| CDY48510 | Canola | cytosol | 36.42 | 46.91 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 46.65 | 46.5 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 36.1 | 46.12 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 46.65 | 45.34 |
| HORVU7Hr1G081290.4 | Barley | plastid | 31.95 | 43.29 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 41.21 | 43.0 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 19.81 | 41.33 |
| CDY00916 | Canola | plasma membrane | 28.75 | 37.66 |
| CDY08616 | Canola | plasma membrane | 28.75 | 37.66 |
| CDX75962 | Canola | plasma membrane | 26.84 | 37.5 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 26.84 | 37.5 |
| CDY67571 | Canola | plasma membrane | 26.52 | 37.05 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 21.41 | 36.02 |
| CDY46172 | Canola | plastid | 22.68 | 35.15 |
| CDX99221 | Canola | plasma membrane | 22.68 | 34.98 |
| CDX96038 | Canola | plasma membrane | 23.32 | 34.6 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 19.81 | 34.44 |
| CDY01898 | Canola | plasma membrane | 22.68 | 33.49 |
| CDX81500 | Canola | plasma membrane | 22.04 | 33.17 |
| CDX82294 | Canola | plastid | 20.77 | 33.16 |
| CDY22971 | Canola | plasma membrane | 20.77 | 33.16 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 21.41 | 33.0 |
| CDY51584 | Canola | plasma membrane | 21.41 | 33.0 |
| CDY22970 | Canola | plasma membrane | 20.45 | 32.65 |
| CDX89122 | Canola | extracellular, mitochondrion | 15.34 | 31.37 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 20.13 | 30.73 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 19.81 | 30.24 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 22.68 | 29.71 |
| CDY36282 | Canola | plasma membrane | 20.77 | 29.15 |
| CDY08567 | Canola | cytosol | 22.04 | 28.63 |
| CDX71213 | Canola | plasma membrane | 18.53 | 28.57 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 18.53 | 28.57 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 20.13 | 25.4 |
| CDY56712 | Canola | mitochondrion | 28.75 | 25.35 |
| CDY12701 | Canola | plasma membrane | 22.68 | 23.51 |
| CDY46067 | Canola | plasma membrane | 15.34 | 23.08 |
| CDX76854 | Canola | plasma membrane | 15.02 | 22.71 |
Protein Annotations
| EnsemblPlants:CDY05135 | EnsemblPlantsGene:GSBRNA2T00119930001 | GO:A0A078ET56 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF70 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDY05135 | ProteinID:CDY05135.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EE6180 | MapMan:13.7.2.1 | : | : | : |
Description
BnaC03g29330D
Coordinates
chrLK031959:-:1006690..1008453
Molecular Weight (calculated)
35109.9 Da
IEP (calculated)
9.816
GRAVY (calculated)
-0.180
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MTASNLGPMK IRNVQFRFGN STAEIKPIQR LRLKSEARFC TNRSETMADE HKHEESLPNL DPAVEVVERG SLMDKISEKI HHKGDSSSSS DDESEKKPSS
101: PSSMKSKVYR LFGRERPVHK VLGGGKPADI FMWKNKKVSG GVLGGATVAW VLFELMEYHL LTLLCHVMIV TLAALFLWSN ATMFIRKSPP KIPEVHIPED
201: PLLQLASGLR IEINRGFSSL HEIASGRDLK KFLSALFGLW ILSILGGCCS FLTLAYIALV LLFTVPLVYD KYEDKVDSYG EKAMAELKNQ YAVLDAKVLS
301: KIPRWTSKNK KKD
101: PSSMKSKVYR LFGRERPVHK VLGGGKPADI FMWKNKKVSG GVLGGATVAW VLFELMEYHL LTLLCHVMIV TLAALFLWSN ATMFIRKSPP KIPEVHIPED
201: PLLQLASGLR IEINRGFSSL HEIASGRDLK KFLSALFGLW ILSILGGCCS FLTLAYIALV LLFTVPLVYD KYEDKVDSYG EKAMAELKNQ YAVLDAKVLS
301: KIPRWTSKNK KKD
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.