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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plastid 1
  • mitochondrion 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
 nucleus: 19621931
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0196500-01
Os01t0226300-01
Os01t0331900-01
Os01t0604700-01
Os01t0641700-01
Os01t0736900-01
Os01t0921600-01
Os02t0117400-01
Os02t0265900-01
Os02t0565200-01
Os03t0358200-00
Os03t0819900-01
Os04t0103300-01
Os04t0105300-01
Os04t0165400-01
Os04t0446300-01
Os05t0159100-01
Os05t0200280-01
Os05t0436400-03
Os05t0461300-01
Os05t0486200-01
Os05t0526400-01
Os05t0589000-02
Os06t0503400-01
Os06t0620600-01
Os07t0239400-01
Os07t0655400-01
Os10t0518200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 Os01t0331900-01 AT1G09330.1 21798944
AT4G11220.1 Os05t0159100-01 AT1G09330.1 21798944
AT4G11220.1 Os04t0165400-01 AT3G59500.1 21798944
AT4G11220.1 Os06t0620600-01 AT3G59500.1 21798944
AT5G41600.1 Os01t0196500-01 AT1G55190.1 21798944
AT5G41600.1 Os05t0200280-01 AT1G55190.1 21798944
AT5G41600.1 Os05t0486200-01 AT1G77350.1 21798944
AT5G41600.1 Os02t0117400-01 AT2G03120.1 21798944
AT5G41600.1 Os05t0436400-03 AT2G03120.1 21798944
AT5G41600.1 Os02t0565200-01 AT2G39960.1 21798944
AT5G41600.1 Os04t0446300-01 AT2G39960.1 21798944
AT5G41600.1 Os04t0105300-01 AT2G46890.1 21798944
AT5G41600.1 Os01t0604700-01 AT3G02420.1 21798944
AT5G41600.1 Os01t0641700-01 AT3G02420.1 21798944
AT5G41600.1 Os05t0589000-02 AT3G02420.1 21798944
AT5G41600.1 Os03t0358200-00 AT3G07950.1 21798944
AT5G41600.1 Os04t0103300-01 AT3G07950.1 21798944
AT5G41600.1 Os07t0655400-01 AT3G07950.1 21798944
AT5G41600.1 Os01t0921600-01 AT3G27080.1 21798944
AT5G41600.1 Os03t0819900-01 AT3G46060.1 21798944
AT5G41600.1 Os05t0461300-01 AT3G46060.1 21798944
AT5G41600.1 Os07t0239400-01 AT3G46060.1 21798944
AT5G41600.1 Os04t0165400-01 AT3G59500.1 21798944
AT5G41600.1 Os06t0620600-01 AT3G59500.1 21798944
AT5G41600.1 Os01t0226300-01 AT5G41600.1 21798944
AT5G41600.1 Os01t0736900-01 AT5G41600.1 21798944
AT5G41600.1 Os02t0265900-01 AT5G41600.1 21798944
AT5G41600.1 Os05t0526400-01 AT5G41600.1 21798944
AT5G41600.1 Os06t0503400-01 AT5G41600.1 21798944
AT5G41600.1 Os10t0518200-01 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER89811 Sorghum peroxisome 81.89 84.77
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 82.64 84.23
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 82.64 84.23
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 82.26 83.52
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 81.13 82.69
HORVU7Hr1G081290.4 Barley plastid 67.55 77.49
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 66.42 76.52
HORVU7Hr1G075700.2 Barley mitochondrion 81.89 72.33
Os01t0226300-01 Rice plasma membrane 39.25 58.43
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 49.81 52.38
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 49.81 52.38
Os05t0526400-01 Rice plasma membrane 49.06 51.79
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 49.81 51.76
Solyc03g007740.2.1 Tomato nucleus 49.81 51.76
CDY13240 Canola cytosol, peroxisome, plasma membrane 31.32 51.55
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 49.06 51.38
KRH41254 Soybean cytosol, nucleus, plasma membrane 49.06 51.18
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 48.3 51.0
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 48.3 51.0
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 48.3 51.0
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 48.68 50.99
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 49.06 50.98
Solyc01g095200.2.1 Tomato plastid 50.57 50.95
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 50.94 50.94
CDY38194 Canola cytosol, nucleus, plasma membrane 47.92 50.8
KRH59988 Soybean mitochondrion 48.3 50.39
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 47.17 50.0
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 50.94 50.0
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 47.92 49.8
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 50.57 49.63
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 46.79 49.6
KRG99174 Soybean endoplasmic reticulum, plasma membrane 16.23 49.43
Os01t0736900-01 Rice plasma membrane 46.79 49.01
CDX79993 Canola cytosol, peroxisome, plasma membrane 46.42 49.0
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 46.42 49.0
CDX90792 Canola cytosol, peroxisome, plasma membrane 49.06 48.69
Bra000739.1-P Field mustard cytosol 48.68 48.31
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 47.92 48.29
CDY42012 Canola cytosol, peroxisome, plasma membrane 45.66 48.21
AT4G11220.1 Thale cress nucleus 48.68 47.6
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 44.91 47.6
KRH40357 Soybean endoplasmic reticulum 46.04 47.47
CDY57657 Canola cytosol, nucleus, plasma membrane 49.06 47.27
Bra013717.1-P Field mustard nucleus 48.68 46.74
KRH00872 Soybean endoplasmic reticulum 45.66 46.72
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 45.28 46.69
KRH06560 Soybean endoplasmic reticulum 44.91 46.48
CDY52012 Canola cytosol, peroxisome, plasma membrane 44.53 46.46
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 44.53 46.27
Bra010539.1-P Field mustard cytosol 46.79 46.1
CDY44123 Canola cytosol, nucleus, plasma membrane 47.92 46.01
Bra019285.1-P Field mustard cytosol 46.42 45.9
AT4G23630.2 Thale cress nucleus 47.55 45.82
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 43.77 45.67
CDY53913 Canola cytosol, peroxisome, plasma membrane 43.77 45.67
CDY24806 Canola cytosol 47.17 45.62
CDY10954 Canola cytosol 46.42 45.56
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 43.02 45.06
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 46.04 45.02
CDY41666 Canola cytosol 46.79 44.93
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 42.64 44.49
KRH35223 Soybean cytosol, nucleus, plasma membrane 40.75 43.2
KRH48008 Soybean cytosol, peroxisome, plasma membrane 47.92 40.45
CDY05135 Canola mitochondrion 47.17 39.94
Os05t0312500-01 Rice plasma membrane 35.85 37.85
Bra037369.1-P Field mustard cytosol 34.34 37.45
CDY07184 Canola cytosol, peroxisome, plasma membrane 34.34 37.45
CDY48510 Canola cytosol 34.34 37.45
VIT_02s0025g00590.t01 Wine grape mitochondrion 8.3 36.67
AT4G01230.2 Thale cress cytosol 33.58 36.48
Os04t0670000-01 Rice plasma membrane 27.17 36.18
Os01t0691400-00 Rice cytosol, peroxisome 31.32 35.93
Os01t0139000-00 Rice plasma membrane 28.3 35.21
CDY62522 Canola cytosol 10.57 35.0
Os03t0781700-01 Rice cytosol, peroxisome, plasma membrane 32.45 34.82
Os07t0142000-01 Rice plasma membrane 31.7 34.15
Bra035242.1-P Field mustard cytosol 25.28 33.5
Os03t0336600-02 Rice plasma membrane 28.68 32.9
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 22.26 32.78
CDX86802 Canola cytosol, nucleus, peroxisome 29.81 32.24
Os01t0851300-01 Rice golgi, plasma membrane, vacuole 24.15 31.53
KRG91601 Soybean mitochondrion 40.38 31.47
Os04t0367400-02 Rice plasma membrane 24.91 30.99
CDX89122 Canola extracellular, mitochondrion 16.98 29.41
Protein Annotations
MapMan:13.7.2.1EntrezGene:4341121EMBL:AK073583ProteinID:BAD45275.1ProteinID:BAF19627.1ProteinID:BAS97937.1
GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
EnsemblPlantsGene:Os06g0503400EnsemblPlants:Os06t0503400-01PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF73
UniProt:Q656J2InterPro:ReticulonTMHMM:TMhelixUniParc:UPI000043A23FRefSeq:XP_015643782.1SEG:seg
Description
Reticulon family protein. (Os06t0503400-01)
Coordinates
chr6:+:17836976..17840764
Molecular Weight (calculated)
28591.9 Da
IEP (calculated)
7.017
GRAVY (calculated)
0.156
Length
265 amino acids
Sequence
(BLAST)
001: MADPAAEETV PAPPPTPAVD PAEGASDAPQ PVELPADTAA ASPEKVSSPP PEPAPAVRSR GFRLLGEDTS VHKALGGGKT ADVLLWKDKK TSAVVIGGAT
101: VIWILFEVLD YHLLTLLSHV MIGALAILFL WSKATTFIKK SPPDIPVVQI PEDVAVNVSR ALRSDINRAL HLFREIALGH DLKKFLGVIV ALWVLSEVGS
201: CCDFLTLIYV AVLMLHTVPI LYDKYQDKVD HFAGRAHSEA CKHYEVLDAK VLSKIPRGPV KPKKN
Best Arabidopsis Sequence Match ( AT4G11220.1 )
(BLAST)
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.