Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 75.49 | 71.59 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 68.48 | 69.84 |
| KRH59988 | Soybean | mitochondrion | 67.7 | 68.5 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 67.32 | 68.11 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 65.76 | 66.27 |
| AT4G23630.2 | Thale cress | nucleus | 69.65 | 65.09 |
| AT4G11220.1 | Thale cress | nucleus | 68.48 | 64.94 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 62.65 | 64.14 |
| Os01t0736900-01 | Rice | plasma membrane | 63.03 | 64.03 |
| Zm00001d012776_P001 | Maize | extracellular | 62.65 | 63.64 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 63.81 | 63.57 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 63.03 | 63.53 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 63.42 | 63.18 |
| Zm00001d043551_P003 | Maize | plasma membrane | 63.03 | 63.03 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 61.48 | 62.95 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 60.7 | 62.9 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 61.87 | 62.85 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 61.87 | 62.85 |
| TraesCS3A01G278800.1 | Wheat | golgi | 60.31 | 62.5 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 61.87 | 62.35 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 61.09 | 62.3 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 60.31 | 62.25 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 65.37 | 62.22 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 65.37 | 62.22 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 59.92 | 62.1 |
| Os01t0226300-01 | Rice | plasma membrane | 42.8 | 61.8 |
| Os05t0526400-01 | Rice | plasma membrane | 60.31 | 61.75 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 60.31 | 61.02 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 59.14 | 60.32 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 50.58 | 59.36 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 58.37 | 58.82 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 56.81 | 57.71 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 59.92 | 55.2 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 61.09 | 54.9 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 60.7 | 54.55 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 52.53 | 54.0 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 59.53 | 53.87 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 49.81 | 50.79 |
| Zm00001d020229_P001 | Maize | plasma membrane | 29.96 | 50.66 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 60.7 | 49.68 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 59.14 | 49.67 |
| Zm00001d020729_P001 | Maize | plasma membrane | 18.29 | 49.47 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 43.97 | 49.13 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 60.31 | 48.14 |
| Zm00001d016041_P001 | Maize | extracellular | 42.8 | 47.83 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 48.25 | 47.51 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 42.8 | 47.41 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 47.08 | 46.54 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 46.69 | 46.15 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 46.69 | 46.15 |
| AT4G01230.2 | Thale cress | cytosol | 43.58 | 45.9 |
| EER89811 | Sorghum | peroxisome | 45.53 | 45.7 |
| Os06t0503400-01 | Rice | plasma membrane | 46.69 | 45.28 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 45.91 | 45.21 |
| HORVU7Hr1G081290.4 | Barley | plastid | 37.74 | 41.99 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 23.35 | 40.0 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 46.69 | 40.0 |
| AT3G18260.1 | Thale cress | plasma membrane | 33.46 | 38.22 |
| AT1G68230.2 | Thale cress | plasma membrane | 29.18 | 34.88 |
| AT3G10260.3 | Thale cress | plasma membrane | 36.19 | 34.83 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 23.35 | 33.33 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 26.07 | 33.0 |
| AT2G15280.1 | Thale cress | plasma membrane | 24.51 | 31.34 |
| AT3G10915.7 | Thale cress | plasma membrane | 27.63 | 28.29 |
| AT3G19460.3 | Thale cress | plasma membrane | 24.51 | 26.92 |
| AT2G23640.1 | Thale cress | cytosol, peroxisome, plasma membrane | 17.51 | 21.84 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:834162 | UniProt:A0A178UBJ5 | ProteinID:AED94696.1 | ArrayExpress:AT5G41600 | EnsemblPlantsGene:AT5G41600 |
| RefSeq:AT5G41600 | TAIR:AT5G41600 | RefSeq:AT5G41600-TAIR-G | EnsemblPlants:AT5G41600.1 | TAIR:AT5G41600.1 | EMBL:AY035169 |
| EMBL:AY057638 | EMBL:AY150449 | ProteinID:BAB11466.1 | Symbol:BTI3 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005886 | GO:GO:0008150 |
| GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0071458 |
| GO:GO:0071782 | GO:GO:0071786 | InterPro:IPR003388 | RefSeq:NP_198975.1 | ProteinID:OAO90584.1 | PFAM:PF02453 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | UniProt:Q9FFS0 | InterPro:Reticulon |
| TMHMM:TMhelix | UniParc:UPI00000AC034 | SEG:seg | : | : | : |
Description
RTNLB4Reticulon-like protein B4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFS0]
Coordinates
chr5:+:16636029..16637908
Molecular Weight (calculated)
28950.4 Da
IEP (calculated)
9.571
GRAVY (calculated)
0.024
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEDHKHEES ILEKIVEKIH GHGDSSSLSD SDDDKKSTSS SSSSFKSKIY RLFGREKPVH KVLGGGKPAD IFLWRNKKVS GGVLGAVTAS WVLFELFEYH
101: LLAFLCHFAI FALAALFLWS NACTFIHKST PHIPEVHIPE DPILQLVSGL RIEINRGLTL LRNIASGKDV KKFILVIAGL WVLSIIGSCY NFLTLFYTAT
201: VLLFTIPVLY EKYEDKVDAY GEKAMREIKK QYAVLDEKVL RKVISKIPRG ALNKKKD
101: LLAFLCHFAI FALAALFLWS NACTFIHKST PHIPEVHIPE DPILQLVSGL RIEINRGLTL LRNIASGKDV KKFILVIAGL WVLSIIGSCY NFLTLFYTAT
201: VLLFTIPVLY EKYEDKVDAY GEKAMREIKK QYAVLDEKVL RKVISKIPRG ALNKKKD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.