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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
EER89811
EER91363
EER92238
EER93147
EER93195
EER99823
EES00126
EES00703
EES01977
EES03240
EES03339
EES04366
EES04687
EES10337
EES11733
EES17764
EES18791
EES19652
EES19841
KXG24074
KXG31516
KXG33320
KXG37644
OQU77594
OQU81657
OQU84758
OQU86697
OQU87114
OQU88745

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 EES00703 AT1G09330.1 21798944
AT4G11220.1 EES17764 AT1G09330.1 21798944
AT4G11220.1 EER93147 AT3G59500.1 21798944
AT4G11220.1 EES04687 AT3G59500.1 21798944
AT4G11220.1 KXG24074 AT3G59500.1 21798944
AT5G41600.1 EES00126 AT1G55190.1 21798944
AT5G41600.1 OQU77594 AT1G55190.1 21798944
AT5G41600.1 OQU86697 AT1G77350.1 21798944
AT5G41600.1 EES04366 AT2G03120.1 21798944
AT5G41600.1 KXG37644 AT2G03120.1 21798944
AT5G41600.1 OQU87114 AT2G03120.1 21798944
AT5G41600.1 OQU81657 AT2G39960.1 21798944
AT5G41600.1 EES10337 AT2G46890.1 21798944
AT5G41600.1 EES03240 AT3G02420.1 21798944
AT5G41600.1 EES03339 AT3G02420.1 21798944
AT5G41600.1 EES18791 AT3G02420.1 21798944
AT5G41600.1 EER92238 AT3G07950.1 21798944
AT5G41600.1 EER99823 AT3G07950.1 21798944
AT5G41600.1 EES11733 AT3G07950.1 21798944
AT5G41600.1 EES01977 AT3G27080.1 21798944
AT5G41600.1 EER93195 AT3G46060.1 21798944
AT5G41600.1 EES19652 AT3G46060.1 21798944
AT5G41600.1 OQU88745 AT3G46060.1 21798944
AT5G41600.1 EER93147 AT3G59500.1 21798944
AT5G41600.1 EES04687 AT3G59500.1 21798944
AT5G41600.1 KXG24074 AT3G59500.1 21798944
AT5G41600.1 EER89811 AT5G41600.1 21798944
AT5G41600.1 EES19841 AT5G41600.1 21798944
AT5G41600.1 KXG31516 AT5G41600.1 21798944
AT5G41600.1 KXG33320 AT5G41600.1 21798944
AT5G41600.1 OQU84758 AT5G41600.1 21798944
AT5G41600.1 EER91363 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d016041_P001 Maize extracellular 93.97 94.78
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 74.14 74.78
EER89811 Sorghum peroxisome 68.1 61.72
KRG99174 Soybean endoplasmic reticulum, plasma membrane 18.97 50.57
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 53.88 49.02
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 52.59 48.41
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 52.59 48.41
KRH41254 Soybean cytosol, nucleus, plasma membrane 52.59 48.03
KRH59988 Soybean mitochondrion 52.59 48.03
Solyc03g007740.2.1 Tomato nucleus 52.59 47.84
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 51.72 47.81
CDX79993 Canola cytosol, peroxisome, plasma membrane 51.72 47.81
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 52.16 47.45
CDY13240 Canola cytosol, peroxisome, plasma membrane 32.76 47.2
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 53.88 47.17
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 54.74 47.04
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 51.29 47.04
CDY42012 Canola cytosol, peroxisome, plasma membrane 50.86 47.01
Solyc01g095200.2.1 Tomato plastid 53.02 46.77
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 51.29 46.67
EES19841 Sorghum cytosol, nucleus, plasma membrane 51.29 46.67
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 54.31 46.67
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 50.86 46.64
CDY52012 Canola cytosol, peroxisome, plasma membrane 50.86 46.46
CDX90792 Canola cytosol, peroxisome, plasma membrane 52.59 45.69
Bra000739.1-P Field mustard cytosol 52.59 45.69
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 50.0 45.67
CDY53913 Canola cytosol, peroxisome, plasma membrane 50.0 45.67
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 50.0 45.49
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 49.14 45.42
KXG33320 Sorghum cytosol, nucleus, plasma membrane 50.43 45.35
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 51.29 45.25
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 48.71 45.02
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 48.71 44.66
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 48.28 44.62
CDY38194 Canola cytosol, nucleus, plasma membrane 47.84 44.4
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 47.84 44.4
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 47.84 44.4
KRH40357 Soybean endoplasmic reticulum 49.14 44.36
AT4G11220.1 Thale cress nucleus 51.72 44.28
CDY57657 Canola cytosol, nucleus, plasma membrane 52.16 44.0
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 46.98 43.6
Bra013717.1-P Field mustard nucleus 51.72 43.48
KRH00872 Soybean endoplasmic reticulum 48.28 43.24
CDY44123 Canola cytosol, nucleus, plasma membrane 51.29 43.12
CDY10954 Canola cytosol 50.0 42.96
Bra019285.1-P Field mustard cytosol 49.57 42.91
AT4G23630.2 Thale cress nucleus 50.86 42.91
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 47.41 42.8
Bra010539.1-P Field mustard cytosol 49.57 42.75
CDY24806 Canola cytosol 50.43 42.7
CDY41666 Canola cytosol 50.0 42.03
KRH06560 Soybean endoplasmic reticulum 46.12 41.8
KXG31516 Sorghum cytosol, nucleus, plasma membrane 50.86 41.55
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 44.83 40.94
KRH35223 Soybean cytosol, nucleus, plasma membrane 43.1 40.0
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 46.55 39.85
KXG21632 Sorghum nucleus, peroxisome, plasma membrane 41.81 39.11
CDY05135 Canola mitochondrion 51.72 38.34
KXG33168 Sorghum golgi, peroxisome, plasma membrane 35.34 37.96
EER90788 Sorghum cytosol, nucleus, plasma membrane 39.66 37.25
EES19907 Sorghum cytosol, peroxisome, plasma membrane 35.34 36.28
KRH48008 Soybean cytosol, peroxisome, plasma membrane 48.71 35.99
CDY07184 Canola cytosol, peroxisome, plasma membrane 37.5 35.8
CDY48510 Canola cytosol 37.5 35.8
Bra037369.1-P Field mustard cytosol 37.5 35.8
VIT_02s0025g00590.t01 Wine grape mitochondrion 9.05 35.0
CDY62522 Canola cytosol 12.07 35.0
EES11624 Sorghum plasma membrane 29.74 34.85
AT4G01230.2 Thale cress cytosol 35.78 34.02
EER92307 Sorghum peroxisome 31.47 32.02
Bra035242.1-P Field mustard cytosol 27.59 32.0
CDX89122 Canola extracellular, mitochondrion 20.69 31.37
EES02516 Sorghum peroxisome, plastid 28.88 30.73
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 23.28 30.0
CDX86802 Canola cytosol, nucleus, peroxisome 31.47 29.8
EES03891 Sorghum golgi, peroxisome, plasma membrane 26.72 29.25
KRG91601 Soybean mitochondrion 42.67 29.12
OQU78555 Sorghum extracellular 26.72 28.05
KXG34376 Sorghum plasma membrane 35.78 26.43
Protein Annotations
EnsemblPlants:OQU84758EnsemblPlantsGene:SORBI_3004G118200GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388InterPro:Reticulon
PANTHER:PTHR10994PANTHER:PTHR10994:SF87PFAM:PF02453PFscan:PS50845ProteinID:OQU84758ProteinID:OQU84758.1
SEG:segTMHMM:TMhelixUniParc:UPI00001AB923UniProt:A0A1Z5RM10MapMan:13.7.2.1:
Description
hypothetical protein
Coordinates
chr4:+:12455748..12459261
Molecular Weight (calculated)
25648.6 Da
IEP (calculated)
8.237
GRAVY (calculated)
0.256
Length
232 amino acids
Sequence
(BLAST)
001: MASPAEETPA AEDTASPPPP PPARSRGFWF LGEDKSVHKA LGGGKTADVL LWKDKKTSAA VVGGATILWV LFEIVEYHLL TLVSHVLIVA LTILFLWSNA
101: TVFIKKSPPD VPEVQISEDL AVNIALALRA DINKALALLR EIALGHNLMK FLGVIVALWI LSEIGELCEL LRFMYIAVLI LHTVPILYHK YQDQVDDFAA
201: KAHRELCKQY KVLDAKVLSK IPRATPKDKK QN
Best Arabidopsis Sequence Match ( AT4G11220.1 )
(BLAST)
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.