CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90109
EER94008
EER94935
EER97649
EES02290
EES11537
EES11656
EES13800
EES19830
EES19854
KXG32258
KXG33095
KXG35486
OQU75953
OQU80824
OQU84787

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27390.1	EER94935	AT3G20000.1	17981999
AT1G27390.1	KXG32258	AT3G20000.1	17981999
AT3G27080.1	EER94008	AT1G03630.1	21798944
AT3G27080.1	EES11656	AT1G03630.1	21798944
AT3G27080.1	EER90109	AT1G15760.1	21798944
AT3G27080.1	EES11537	AT1G15760.1	21798944
AT3G27080.1	OQU75953	AT1G15760.1	21798944
AT3G27080.1	OQU80824	AT1G15760.1	21798944
AT3G27080.1	EES19854	AT2G20130.1	21798944
AT3G27080.1	OQU84787	AT2G20130.1	21798944
AT3G27080.1	KXG33095	AT2G31040.1	21798944
AT3G27080.1	EES02290	AT3G16310.1	21798944
AT3G27080.1	EES19830	AT3G16310.1	21798944
AT3G27080.1	EER94935	AT3G20000.1	17981999
AT3G27080.1	KXG32258	AT3G20000.1	17981999
AT3G27080.1	EER97649	AT5G13720.1	21798944
AT5G40930.1	EES13800	AT2G46550.1	21798944
AT5G40930.1	KXG35486	AT2G46550.1	21798944
AT5G40930.1	EER94935	AT3G20000.1	17981999
AT5G40930.1	KXG32258	AT3G20000.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	92.12	92.12
Zm00001d012017_P002	Maize	mitochondrion	82.27	82.67
Os01t0921600-01	Rice	mitochondrion, plastid	75.86	76.24
TraesCS3B01G467700.1	Wheat	golgi	68.47	66.51
TraesCS3A01G429800.1	Wheat	cytosol	67.98	65.71
TraesCS3D01G425100.1	Wheat	cytosol	67.49	65.55
GSMUA_AchrUn_...	Banana	cytosol	59.11	59.7
VIT_14s0068g02030.t01	Wine grape	cytosol	58.13	58.71
GSMUA_Achr8P09300_001	Banana	cytosol	56.65	57.21
Solyc02g068130.2.1	Tomato	plastid	56.65	56.37
KRG94268	Soybean	nucleus	56.16	54.55
PGSC0003DMT400052223	Potato	cytosol	54.19	53.66
KRH57705	Soybean	nucleus	54.19	52.38
KRH31475	Soybean	mitochondrion	51.72	52.24
Solyc02g094140.2.1	Tomato	cytosol	51.72	51.47
PGSC0003DMT400056939	Potato	cytosol	41.87	50.3
AT5G40930.1	Thale cress	cytosol	45.81	49.73
GSMUA_Achr8P00740_001	Banana	cytosol	41.38	49.12
KRG97423	Soybean	cytosol	52.22	48.85
AT1G27390.1	Thale cress	cytosol	49.75	48.1
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	17.73	47.37
PGSC0003DMT400056935	Potato	cytosol	44.34	46.88
CDY27615	Canola	cytosol	47.78	45.75
Bra032826.1-P	Field mustard	cytosol	47.78	45.75
CDX84923	Canola	cytosol	46.8	45.67
CDY34181	Canola	cytosol	44.34	45.23
Bra032980.1-P	Field mustard	cytosol	44.34	45.23
CDY28496	Canola	cytosol	43.84	44.06
AT3G27080.1	Thale cress	cytosol	43.35	43.56
CDY03918	Canola	cytosol	44.34	43.27
CDY11814	Canola	cytosol	44.34	43.27
Bra010946.1-P	Field mustard	cytosol	43.35	42.11
CDX90082	Canola	cytosol	42.36	41.35
CDY15710	Canola	cytosol	42.86	41.04
Bra030044.1-P	Field mustard	cytosol	42.86	40.47
HORVU3Hr1G094550.2	Barley	plastid	36.95	33.48
CDY35747	Canola	cytosol	20.2	32.03
AT3G27070.2	Thale cress	plasma membrane	34.48	28.23

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.2.1.5	EntrezGene:8059370	UniProt:C5XGB6	EnsemblPlants:EES01977	ProteinID:EES01977
ProteinID:EES01977.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005742	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0045040	InterPro:IPR011990
PFAM:PD102047	PFAM:PF06552	PANTHER:PTHR32409	EnsemblPlantsGene:SORBI_3003G405900	SUPFAM:SSF48452	unigene:Sbi.9344
TMHMM:TMhelix	InterPro:TOM20_imprt_rcpt	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A85190	RefSeq:XP_002456857.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:71291589..71295093

Molecular Weight (calculated)

22416.4 Da

IEP (calculated)

4.682

GRAVY (calculated)

-0.415

Length

203 amino acids

Sequence
(BLAST)

001: MEMGGMSDAE RLFFFEMACK NSEAVYEQNP NDADNLTRWG GALLELSQVR AGPDGLKLLE DAEAKLEEAL QIDPNKSDAL WCLGNAQTSH GFFTPDTAIA
101: NEFFAKATGC FQKAVDLEPA NELYRKSLDL STKAPELHLE IQRQMVSQAA TQASSASNPR QSRKKKKDSD FWYDVFGWVI LGAGIFAWVG LARSMPPPPP
201: PAR

Best Arabidopsis Sequence Match ( AT1G27390.1 )
(BLAST)

001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR

Arabidopsis Description

TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.