CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34181	Canola	cytosol	43.75	28.14
CDY28496	Canola	cytosol	42.97	27.23
PGSC0003DMT400052223	Potato	cytosol	36.72	22.93
Solyc02g094140.2.1	Tomato	cytosol	35.16	22.06
Solyc02g068130.2.1	Tomato	plastid	33.59	21.08
CDY27615	Canola	cytosol	34.38	20.75
CDX84923	Canola	cytosol	33.59	20.67
EES01977	Sorghum	cytosol	32.03	20.2
PGSC0003DMT400056939	Potato	cytosol	26.56	20.12
Os01t0921600-01	Rice	mitochondrion, plastid	31.25	19.8
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	31.25	19.7
Zm00001d012017_P002	Maize	mitochondrion	30.47	19.31
PGSC0003DMT400056935	Potato	cytosol	28.12	18.75
CDY11814	Canola	cytosol	30.47	18.75
CDY03918	Canola	cytosol	29.69	18.27
TraesCS3B01G467700.1	Wheat	golgi	29.69	18.18
TraesCS3D01G425100.1	Wheat	cytosol	29.69	18.18
TraesCS3A01G429800.1	Wheat	cytosol	29.69	18.1
CDX90082	Canola	cytosol	28.12	17.31
CDY15710	Canola	cytosol	28.12	16.98
Zm00001d040209_P001	Maize	cytosol	20.31	15.95
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	7.03	11.84
HORVU3Hr1G094550.2	Barley	plastid	17.19	9.82
HORVU7Hr1G075380.6	Barley	cytosol, plastid	3.12	2.44

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.2.1.5	GO:A0A078HD39	UniProt:A0A078HD39	EnsemblPlants:CDY35747	ProteinID:CDY35747
ProteinID:CDY35747.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005742	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0045040	EnsemblPlantsGene:GSBRNA2T00059185001	InterPro:IPR011990
PFAM:PD102047	PFAM:PF06552	PANTHER:PTHR32409	SUPFAM:SSF48452	InterPro:TOM20_imprt_rcpt	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0004EB2A37	:	:	:	:	:

Description

BnaC03g58680DBnaC03g58680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD39]

Coordinates

chrLK032359:-:248694..249691

Molecular Weight (calculated)

14410.3 Da

IEP (calculated)

4.458

GRAVY (calculated)

0.123

Length

128 amino acids

Sequence
(BLAST)

001: MIYGLVIEAI TTLEEALLIE PKKHAAICCL GNAYTTFAFL TPEETEAKYN FDLASHFFQL AVDEAPLLHA ETPVFERLEN KIEITNFPIT YAASKSSGDV
101: VNYRNMKEQT AYHLAIPGNV TLEFVYML

Best Arabidopsis Sequence Match ( AT3G27080.1 )
(BLAST)

001: MDTETEFDRI LLFEQIRQDA ENTYKSNPLD ADNLTRWGGV LLELSQFHSI SDAKQMIQEA ITKFEEALLI DPKKDEAVWC IGNAYTSFAF LTPDETEAKH
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR

Arabidopsis Description

TOM20-3Mitochondrial import receptor subunit TOM20-3 [Source:UniProtKB/Swiss-Prot;Acc:P82874]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.