Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032826.1-P | Field mustard | cytosol | 97.6 | 95.75 |
| CDY27615 | Canola | cytosol | 97.6 | 95.75 |
| CDY15710 | Canola | cytosol | 78.37 | 76.89 |
| CDY03918 | Canola | cytosol | 73.56 | 73.56 |
| AT1G27390.1 | Thale cress | cytosol | 71.63 | 70.95 |
| CDX90082 | Canola | cytosol | 70.19 | 70.19 |
| CDY11814 | Canola | cytosol | 68.27 | 68.27 |
| Solyc02g068130.2.1 | Tomato | plastid | 56.25 | 57.35 |
| PGSC0003DMT400052223 | Potato | cytosol | 56.25 | 57.07 |
| KRH31475 | Soybean | mitochondrion | 53.85 | 55.72 |
| Solyc02g094140.2.1 | Tomato | cytosol | 54.33 | 55.39 |
| KRG97423 | Soybean | cytosol | 54.33 | 52.07 |
| CDY34181 | Canola | cytosol | 48.56 | 50.75 |
| CDY28496 | Canola | cytosol | 48.08 | 49.51 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 46.15 | 47.29 |
| Zm00001d012017_P002 | Maize | mitochondrion | 45.67 | 47.03 |
| EES01977 | Sorghum | cytosol | 45.67 | 46.8 |
| PGSC0003DMT400056939 | Potato | cytosol | 37.98 | 46.75 |
| PGSC0003DMT400056935 | Potato | cytosol | 42.79 | 46.35 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 41.35 | 42.57 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 42.79 | 42.38 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 15.38 | 42.11 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 42.31 | 42.11 |
| TraesCS3B01G467700.1 | Wheat | golgi | 41.83 | 41.63 |
| Zm00001d040209_P001 | Maize | cytosol | 27.4 | 34.97 |
| CDY35747 | Canola | cytosol | 20.67 | 33.59 |
| HORVU3Hr1G094550.2 | Barley | plastid | 25.48 | 23.66 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 15.87 | 20.12 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | GO:A0A078DCB0 | EnsemblPlants:CDX84923 | ProteinID:CDX84923 | ProteinID:CDX84923.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0045040 | EnsemblPlantsGene:GSBRNA2T00142275001 | InterPro:IPR011990 | PFAM:PD102047 |
| PFAM:PF06552 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI0004EE70D3 | SEG:seg | : | : | : | : |
Description
BnaC05g21320D
Coordinates
chrLK031839:+:285634..287096
Molecular Weight (calculated)
22620.8 Da
IEP (calculated)
5.875
GRAVY (calculated)
-0.387
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSAADFER LVMFEHARKA CEAQYAKDPL DSENLLQWGG ALLELAQFQS IPEAKLMLND AVSKLEEVLT LNPGKHQALW CLGNAYTAHA FLTPDTDEAK
101: VHFDKAADYF QRAENEDPGN EMYLKSLEVT ARAPGLHMNI HGNGTMQQSL GGGGGPSASS NAGGGKKKNK NKNNDFTYDV CGWIILAFGI VAWVGMAKSL
201: GPPHPPAR
101: VHFDKAADYF QRAENEDPGN EMYLKSLEVT ARAPGLHMNI HGNGTMQQSL GGGGGPSASS NAGGGKKKNK NKNNDFTYDV CGWIILAFGI VAWVGMAKSL
201: GPPHPPAR
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Arabidopsis Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.