Factsheet for Solyc02g068130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g087680.2.1
Solyc01g087710.2.1
Solyc03g083000.2.1
Solyc03g120880.2.1
Solyc06g007710.2.1
Solyc06g074170.2.1
Solyc06g082800.2.1
Solyc07g054210.2.1
Solyc07g055050.2.1
Solyc10g006900.2.1
Solyc11g066510.1.1
Solyc11g068750.1.1
Solyc12g007130.1.1
Solyc12g010870.1.1
Solyc12g013710.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27390.1	Solyc06g007710.2.1	AT3G20000.1	17981999
AT1G27390.1	Solyc06g082800.2.1	AT3G20000.1	17981999
AT3G27080.1	Solyc07g054210.2.1	AT1G03630.1	21798944
AT3G27080.1	Solyc10g006900.2.1	AT1G03630.1	21798944
AT3G27080.1	Solyc12g013710.1.1	AT1G03630.1	21798944
AT3G27080.1	Solyc12g007130.1.1	AT2G20130.1	21798944
AT3G27080.1	Solyc07g055050.2.1	AT2G31040.1	21798944
AT3G27080.1	Solyc12g010870.1.1	AT2G31040.1	21798944
AT3G27080.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT3G27080.1	Solyc06g007710.2.1	AT3G20000.1	17981999
AT3G27080.1	Solyc06g082800.2.1	AT3G20000.1	17981999
AT3G27080.1	Solyc01g087680.2.1	AT5G13720.1	21798944
AT3G27080.1	Solyc01g087710.2.1	AT5G13720.1	21798944
AT3G27080.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT3G27080.1	Solyc11g068750.1.1	AT5G22290.1	21798944
AT5G40930.1	Solyc11g066510.1.1	AT2G27940.1	21798944
AT5G40930.1	Solyc03g083000.2.1	AT2G46550.1	21798944
AT5G40930.1	Solyc06g007710.2.1	AT3G20000.1	17981999
AT5G40930.1	Solyc06g082800.2.1	AT3G20000.1	17981999
AT5G40930.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT5G40930.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g02030.t01	Wine grape	cytosol	75.0	76.12
KRH57705	Soybean	nucleus	77.45	75.24
KRG94268	Soybean	nucleus	74.51	72.73
Solyc02g094140.2.1	Tomato	cytosol	72.55	72.55
PGSC0003DMT400056939	Potato	cytosol	57.35	69.23
PGSC0003DMT400056935	Potato	cytosol	64.71	68.75
KRH31475	Soybean	mitochondrion	64.22	65.17
KRG97423	Soybean	cytosol	65.2	61.29
Os01t0921600-01	Rice	mitochondrion, plastid	57.84	58.42
Zm00001d012017_P002	Maize	mitochondrion	57.35	57.92
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	56.86	57.14
EES01977	Sorghum	cytosol	56.37	56.65
CDX84923	Canola	cytosol	57.35	56.25
Bra032826.1-P	Field mustard	cytosol	58.33	56.13
CDY27615	Canola	cytosol	58.33	56.13
Bra032980.1-P	Field mustard	cytosol	54.41	55.78
CDY34181	Canola	cytosol	54.41	55.78
AT3G27080.1	Thale cress	cytosol	54.9	55.45
AT5G40930.1	Thale cress	cytosol	50.49	55.08
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	20.1	53.95
CDY28496	Canola	cytosol	52.94	53.47
AT1G27390.1	Thale cress	cytosol	53.92	52.38
TraesCS3B01G467700.1	Wheat	golgi	52.94	51.67
CDY03918	Canola	cytosol	52.45	51.44
TraesCS3A01G429800.1	Wheat	cytosol	52.94	51.43
TraesCS3D01G425100.1	Wheat	cytosol	51.96	50.72
CDY15710	Canola	cytosol	50.98	49.06
Bra030044.1-P	Field mustard	cytosol	50.98	48.37
CDX90082	Canola	cytosol	47.06	46.15
Bra010946.1-P	Field mustard	cytosol	47.06	45.93
CDY11814	Canola	cytosol	46.57	45.67
Zm00001d040209_P001	Maize	cytosol	33.82	42.33
CDY35747	Canola	cytosol	21.08	33.59
AT3G27070.2	Thale cress	plasma membrane	39.22	32.26
HORVU3Hr1G094550.2	Barley	plastid	28.92	26.34
HORVU7Hr1G075380.6	Barley	cytosol, plastid	17.65	21.95

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.2.1.5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005742	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0045040
InterPro:IPR011990	UniProt:K4B7E5	PFAM:PD102047	PFAM:PF06552	PANTHER:PTHR32409	SUPFAM:SSF48452
EnsemblPlantsGene:Solyc02g068130.2	EnsemblPlants:Solyc02g068130.2.1	TMHMM:TMhelix	InterPro:TOM20_imprt_rcpt	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276775D
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:38166400..38172458

Molecular Weight (calculated)

22819.9 Da

IEP (calculated)

5.831

GRAVY (calculated)

-0.533

Length

204 amino acids

Sequence
(BLAST)

001: MEMQSEFDRL LFFEHARKSA ETAYAQNPLD ADNLTRWGGA LLELSQFQPV AESKQMISDA TSKLEEALTV NPEKHDALWC LGNAHTSHAF LTPDMDEAKV
101: YFEKATQCFQ QAFDADPSND LYRKSLEVTA KAPELHMEIH RHGPMQQPMA AEPSTSTSTK SSKKKKSSDL KYDIFGWVIL AVGIVAWVGF AKSNMPPPPP
201: PHPQ

Best Arabidopsis Sequence Match ( AT3G27080.1 )
(BLAST)

001: MDTETEFDRI LLFEQIRQDA ENTYKSNPLD ADNLTRWGGV LLELSQFHSI SDAKQMIQEA ITKFEEALLI DPKKDEAVWC IGNAYTSFAF LTPDETEAKH
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR

Arabidopsis Description

TOM20-3Mitochondrial import receptor subunit TOM20-3 [Source:UniProtKB/Swiss-Prot;Acc:P82874]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.