Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane | 66.82 | 75.0 |
| Solyc01g087680.2.1 | Tomato | plastid | 82.27 | 66.79 |
| AT5G13720.1 | Thale cress | plastid | 75.45 | 63.36 |
| CDX85631 | Canola | plastid | 75.0 | 61.34 |
| KRH13984 | Soybean | plastid | 74.09 | 61.28 |
| Bra023431.1-P | Field mustard | plastid | 74.55 | 60.97 |
| CDY09825 | Canola | plastid | 73.64 | 60.22 |
| CDX91101 | Canola | plastid | 73.18 | 59.85 |
| CDY65989 | Canola | plastid | 73.64 | 59.78 |
| Bra008808.1-P | Field mustard | plastid | 73.18 | 59.63 |
| VIT_13s0064g00200.t01 | Wine grape | plastid | 74.55 | 58.99 |
| EER97649 | Sorghum | plastid | 70.0 | 57.89 |
| Zm00001d007072_P001 | Maize | plastid | 68.64 | 57.63 |
| Os07t0656600-01 | Rice | plasma membrane, plastid | 67.27 | 55.64 |
| Zm00001d022371_P001 | Maize | plastid | 66.82 | 55.26 |
| TraesCS2A01G133900.1 | Wheat | mitochondrion | 68.64 | 53.74 |
| TraesCS2B01G157500.1 | Wheat | mitochondrion | 68.64 | 53.17 |
| TraesCS2D01G136100.1 | Wheat | mitochondrion | 67.73 | 52.46 |
| Os07t0656700-01 | Rice | mitochondrion, plastid | 67.73 | 52.1 |
| HORVU2Hr1G023480.3 | Barley | plastid | 68.64 | 44.67 |
| Solyc08g075280.2.1 | Tomato | plastid | 33.64 | 29.02 |
| Solyc04g079760.2.1 | Tomato | mitochondrion, plasma membrane | 29.55 | 22.18 |
Protein Annotations
| EnsemblPlants:Solyc01g087710.2.1 | EnsemblPlantsGene:Solyc01g087710.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:UPF0114 |
| PANTHER:PTHR31721 | PANTHER:PTHR31721:SF1 | PFAM:PF03350 | PIRSF:PIRSF026509 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002763399 | UniProt:K4AYG1 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1:+:82622279..82623866
Molecular Weight (calculated)
24090.7 Da
IEP (calculated)
8.316
GRAVY (calculated)
0.469
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MPESSSSSTS SGSTVLTSPL VPSVEPSKNG LVRFVQNTES TVERAIFDFR FLAFLAIGGS LAGSLLCFLN GCIYIIDAYK VYWTNCVKGI HTGQMVLRLV
101: EAIDVYLAGT VMFIFGMGLY GLFITDFSAD GSPTADRALK HSSLFGMFAL KERPKWMKIS SLDELKTKVG HVIVMILLVK MFERSKMVPI ATGTDLLSYS
201: VCIFLSSASL YILHALHKSE
101: EAIDVYLAGT VMFIFGMGLY GLFITDFSAD GSPTADRALK HSSLFGMFAL KERPKWMKIS SLDELKTKVG HVIVMILLVK MFERSKMVPI ATGTDLLSYS
201: VCIFLSSASL YILHALHKSE
001: MALSSLISAT PLSLSVPRYL VLPTRRRFHL PLATLDSSPP ESSASSSIPT SIPVNGNTLP SSYGTRKDDS PFAQFFRSTE SNVERIIFDF RFLALLAVGG
101: SLAGSLLCFL NGCVYIVEAY KVYWTNCSKG IHTGQMVLRL VEAIDVYLAG TVMLIFSMGL YGLFISHSPH DVPPESDRAL RSSSLFGMFA MKERPKWMKI
201: SSLDELKTKV GHVIVMILLV KMFERSKMVT IATGLDLLSY SVCIFLSSAS LYILHNLHKG ET
101: SLAGSLLCFL NGCVYIVEAY KVYWTNCSKG IHTGQMVLRL VEAIDVYLAG TVMLIFSMGL YGLFISHSPH DVPPESDRAL RSSSLFGMFA MKERPKWMKI
201: SSLDELKTKV GHVIVMILLV KMFERSKMVT IATGLDLLSY SVCIFLSSAS LYILHNLHKG ET
Arabidopsis Description
Uncharacterized protein At5g13720 [Source:UniProtKB/TrEMBL;Acc:Q9FNA1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.