Factsheet for Bra008808.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09825	Canola	plastid	98.52	98.88
CDY65989	Canola	plastid	98.52	98.16
Bra023431.1-P	Field mustard	plastid	88.15	88.48
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	56.67	78.06
Solyc01g087710.2.1	Tomato	nucleus	59.63	73.18
AT5G13720.1	Thale cress	plastid	70.74	72.9
KRH13984	Soybean	plastid	61.85	62.78
Zm00001d022371_P001	Maize	plastid	61.11	62.03
EER97649	Sorghum	plastid	60.37	61.28
Solyc01g087680.2.1	Tomato	plastid	61.11	60.89
VIT_13s0064g00200.t01	Wine grape	plastid	62.59	60.79
Zm00001d007072_P001	Maize	plastid	58.89	60.69
Os07t0656600-01	Rice	plasma membrane, plastid	59.26	60.15
TraesCS2B01G157500.1	Wheat	mitochondrion	60.37	57.39
TraesCS2A01G133900.1	Wheat	mitochondrion	59.63	57.3
TraesCS2D01G136100.1	Wheat	mitochondrion	59.63	56.69
Os07t0656700-01	Rice	mitochondrion, plastid	58.89	55.59
HORVU2Hr1G023480.3	Barley	plastid	60.74	48.52
Bra013392.1-P	Field mustard	plastid	31.85	33.59
Bra027440.1-P	Field mustard	mitochondrion	24.44	23.83

Protein Annotations

EnsemblPlants:Bra008808.1	EnsemblPlants:Bra008808.1-P	EnsemblPlantsGene:Bra008808	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:UPF0114	InterPro:UPF0114_pln	ncoils:Coil	PANTHER:PTHR31721	PANTHER:PTHR31721:SF1	PFAM:PF03350
PIRSF:PIRSF022348	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002543782	UniProt:M4CX61	MapMan:35.2

Description

AT5G13720 (E=2e-101) | LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022348 (InterPro:IPR016804), Uncharacterised protein family UPF0114 (InterPro:IPR005134); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19390.1); Has 294 Blast hits to 294 proteins in 98 species: Archae - 18; Bacteria - 168; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

Coordinates

chrA10:-:13927956..13929061

Molecular Weight (calculated)

29627.4 Da

IEP (calculated)

9.312

GRAVY (calculated)

0.344

Length

270 amino acids

Sequence
(BLAST)

001: MANLYTLASA ARLSVSLPNP HVLPTRRRFH LPLATLASSS SPESSSASPT PSSIPVVNGN TLSSSYGTRD KVVVDDNSLF ARFFRSTEST VEKIIFDFRF
101: LALLAVGGSL AGSLLCFLNG CVYVMEAYKV YWTNCVKGIH KGQMVLHLVE AIDVYLAGTV MLIFSMGLYG LFISNSPSDI PPESDRALKA SSLFGMFAMK
201: ERPKWMKISS LDELKTKVGH VIVMILLVKM FERSKMVTIA TGLDLLSYSV CIFLSSASLY ILHNLHKGEH

Best Arabidopsis Sequence Match ( AT5G13720.1 )
(BLAST)

001: MALSSLISAT PLSLSVPRYL VLPTRRRFHL PLATLDSSPP ESSASSSIPT SIPVNGNTLP SSYGTRKDDS PFAQFFRSTE SNVERIIFDF RFLALLAVGG
101: SLAGSLLCFL NGCVYIVEAY KVYWTNCSKG IHTGQMVLRL VEAIDVYLAG TVMLIFSMGL YGLFISHSPH DVPPESDRAL RSSSLFGMFA MKERPKWMKI
201: SSLDELKTKV GHVIVMILLV KMFERSKMVT IATGLDLLSY SVCIFLSSAS LYILHNLHKG ET

Arabidopsis Description

Uncharacterized protein At5g13720 [Source:UniProtKB/TrEMBL;Acc:Q9FNA1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.