Factsheet for Solyc01g087680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g087710.2.1	Tomato	nucleus	66.79	82.27
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	58.3	80.61
AT5G13720.1	Thale cress	plastid	64.94	67.18
KRH13984	Soybean	plastid	65.31	66.54
VIT_13s0064g00200.t01	Wine grape	plastid	67.9	66.19
CDX85631	Canola	plastid	62.36	62.83
EER97649	Sorghum	plastid	61.62	62.78
Bra023431.1-P	Field mustard	plastid	61.99	62.45
CDX91101	Canola	plastid	61.62	62.08
Zm00001d007072_P001	Maize	plastid	59.41	61.45
CDY65989	Canola	plastid	61.25	61.25
Bra008808.1-P	Field mustard	plastid	60.89	61.11
CDY09825	Canola	plastid	60.52	60.97
Zm00001d022371_P001	Maize	plastid	59.04	60.15
TraesCS2D01G136100.1	Wheat	mitochondrion	61.62	58.8
Os07t0656600-01	Rice	plasma membrane, plastid	56.83	57.89
Os07t0656700-01	Rice	mitochondrion, plastid	59.78	56.64
TraesCS2A01G133900.1	Wheat	mitochondrion	58.67	56.58
TraesCS2B01G157500.1	Wheat	mitochondrion	59.04	56.34
HORVU2Hr1G023480.3	Barley	plastid	57.93	46.45
Solyc08g075280.2.1	Tomato	plastid	30.26	32.16
Solyc04g079760.2.1	Tomato	mitochondrion, plasma membrane	26.57	24.57

Protein Annotations

EnsemblPlants:Solyc01g087680.2.1	EnsemblPlantsGene:Solyc01g087680.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:UPF0114
InterPro:UPF0114_pln	PANTHER:PTHR31721	PANTHER:PTHR31721:SF1	PFAM:PF03350	PIRSF:PIRSF022348	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002763396	UniProt:K4AYF8	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr1:+:82609612..82613666

Molecular Weight (calculated)

29541.2 Da

IEP (calculated)

9.658

GRAVY (calculated)

0.327

Length

271 amino acids

Sequence
(BLAST)

001: MAALTSASLT RVPFSISNRR NYRRLPIILA SSSSAMPSHE PSSSSSSSTE IGSILSSPKA PFVDSSKPPQ NGYIASPNGS PLVKFVQHTE STIERAIFDF
101: RFLALLAVGG SLAGSLLCFL NGCVYIVDAY KVYWTSCVKG IHTGQMVLRL VEAIDVYLAG TVMLIFGMGL YGLFITNVSP DVHPTADRAL KQSSLFGMFA
201: LKERPKWMKI SSLDELKTKV GHVIVMILLV KMFERSKMVT IATGTDLLSY SVCIFLSSAS LYILHNLHKS D

Best Arabidopsis Sequence Match ( AT5G13720.1 )
(BLAST)

001: MALSSLISAT PLSLSVPRYL VLPTRRRFHL PLATLDSSPP ESSASSSIPT SIPVNGNTLP SSYGTRKDDS PFAQFFRSTE SNVERIIFDF RFLALLAVGG
101: SLAGSLLCFL NGCVYIVEAY KVYWTNCSKG IHTGQMVLRL VEAIDVYLAG TVMLIFSMGL YGLFISHSPH DVPPESDRAL RSSSLFGMFA MKERPKWMKI
201: SSLDELKTKV GHVIVMILLV KMFERSKMVT IATGLDLLSY SVCIFLSSAS LYILHNLHKG ET

Arabidopsis Description

Uncharacterized protein At5g13720 [Source:UniProtKB/TrEMBL;Acc:Q9FNA1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.