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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • mitochondrion 1
  • plasma membrane 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra008808.1-P Field mustard plastid 98.88 98.52
CDY65989 Canola plastid 97.77 97.05
CDX85631 Canola plastid 89.59 89.59
CDX91101 Canola plastid 84.76 84.76
GSMUA_Achr11P... Banana extracellular, plasma membrane 56.51 77.55
Solyc01g087710.2.1 Tomato nucleus 60.22 73.64
AT5G13720.1 Thale cress plastid 70.63 72.52
KRH13984 Soybean plastid 60.97 61.65
Solyc01g087680.2.1 Tomato plastid 60.97 60.52
VIT_13s0064g00200.t01 Wine grape plastid 62.45 60.43
CDY09866 Canola mitochondrion 36.06 47.55
CDX99380 Canola plastid 31.6 33.2
CDY69061 Canola plastid 16.73 29.61
CDY63350 Canola mitochondrion 24.16 23.72
CDY52071 Canola mitochondrion 24.16 23.47
Protein Annotations
EnsemblPlants:CDY09825EnsemblPlantsGene:GSBRNA2T00031549001GO:A0A078F5U4GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:UPF0114InterPro:UPF0114_plnPANTHER:PTHR31721PANTHER:PTHR31721:SF1PFAM:PF03350PIRSF:PIRSF022348
ProteinID:CDY09825ProteinID:CDY09825.1SEG:segTMHMM:TMhelixUniParc:UPI0004EF0B3DUniProt:A0A078F5U4
MapMan:35.2:::::
Description
BnaC09g43360DBnaC09g43360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5U4]
Coordinates
chrLK031999:+:313095..314478
Molecular Weight (calculated)
29576.4 Da
IEP (calculated)
9.312
GRAVY (calculated)
0.362
Length
269 amino acids
Sequence
(BLAST)
001: MANLYTLASA TRLSVSLPNP HVLPTRRRFH LPLATLASSS SPESSASSTP SSIPVVNGNT LSSSYGTRDK VVVDDNSLFA RFFRSTESTV EKIIFDFRFL
101: ALLAVGGSLA GSLLCFLNGC VYVMEAYKVY WTNCVKGIHK GQMVLHLVEA IDVYLAGTVM LIFSMGLYGL FISNSPSDIL PESDRALKAS SLFGMFAMKE
201: RPKWMKISSL DELKTKVGHV IVMILLVKMF ERSKMVTIAT GLDLLSYSVC IFLSSASLYI LHNLHKGEH
Best Arabidopsis Sequence Match ( AT5G13720.1 )
(BLAST)
001: MALSSLISAT PLSLSVPRYL VLPTRRRFHL PLATLDSSPP ESSASSSIPT SIPVNGNTLP SSYGTRKDDS PFAQFFRSTE SNVERIIFDF RFLALLAVGG
101: SLAGSLLCFL NGCVYIVEAY KVYWTNCSKG IHTGQMVLRL VEAIDVYLAG TVMLIFSMGL YGLFISHSPH DVPPESDRAL RSSSLFGMFA MKERPKWMKI
201: SSLDELKTKV GHVIVMILLV KMFERSKMVT IATGLDLLSY SVCIFLSSAS LYILHNLHKG ET
Arabidopsis Description
Uncharacterized protein At5g13720 [Source:UniProtKB/TrEMBL;Acc:Q9FNA1]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.