CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69061	Canola	plastid	57.42	96.71
AT4G19390.1	Thale cress	plastid	68.75	64.47
GSMUA_Achr7P17350_001	Banana	cytosol, extracellular, plasma membrane	37.11	62.09
GSMUA_Achr1P10680_001	Banana	plasma membrane	41.8	52.71
KRH39766	Soybean	plastid	54.3	52.65
KRH76446	Soybean	plastid	53.91	52.27
VIT_02s0087g00610.t01	Wine grape	plastid	50.39	50.99
Solyc08g075280.2.1	Tomato	plastid	48.44	48.63
PGSC0003DMT400075309	Potato	plastid	46.48	47.6
Os06t0710300-01	Rice	mitochondrion	46.09	45.91
TraesCS7A01G407800.1	Wheat	plastid	44.92	43.89
Zm00001d014744_P001	Maize	plastid	42.97	43.82
TraesCS7B01G308000.1	Wheat	plastid	44.53	43.68
TraesCS7D01G401500.1	Wheat	plastid	44.53	43.68
CDY09825	Canola	plastid	33.2	31.6
CDY65989	Canola	plastid	33.2	31.37
CDX91101	Canola	plastid	32.81	31.23
CDX85631	Canola	plastid	32.42	30.86
OQU77073	Sorghum	plastid	41.8	26.16
CDY09866	Canola	mitochondrion	17.97	22.55
CDY63350	Canola	mitochondrion	21.48	20.07
CDY52071	Canola	mitochondrion	21.48	19.86

Protein Annotations

EnsemblPlants:CDX99380	EnsemblPlantsGene:GSBRNA2T00107698001	GO:A0A078EBA3	InterPro:UPF0114	InterPro:UPF0114_pln	PANTHER:PTHR31721
PANTHER:PTHR31721:SF4	PFAM:PF03350	PIRSF:PIRSF022348	ProteinID:CDX99380	ProteinID:CDX99380.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EAFA0A	MapMan:35.2	:	:	:

Description

BnaC01g11720D

Coordinates

chrLK031910:+:263435..265441

Molecular Weight (calculated)

27743.1 Da

IEP (calculated)

9.516

GRAVY (calculated)

0.415

Length

256 amino acids

Sequence
(BLAST)

001: MTTPPCRTIN ANNAIAAPSP SGMIFRDKRL VKSSSPGLNL PTKRLAWSLS SPGRFLSSPV ASSSSSAAVT SNSTNRLEAL EEGIEKVIYQ CRFMAFLGTL
101: GSLLGSVLCF IKGCLYVADS FVQYSVNRGK VILLLVEAID TYLLGTVMLV FGMGLYELFI SNLTTSETIS HDSVSNRSSL FGMFPLKERP QWLEVKTVSE
201: LKTKLGHVIV MLLLIGLFDK SRKVAITSVA DLLCISASIF LSSACLFLLS RLNGSH

Best Arabidopsis Sequence Match ( AT4G19390.1 )
(BLAST)

001: MTTPCRTINA NAIAAPSPSG LIFNGFRDFV PIEKRLVISS FRGLKLPSRT TKTITSSDWS WSYRSPGRLA SASTSTSAST STSAAVTSNS TNRFEALEEG
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH

Arabidopsis Description

AT4g19390/T5K18_170 [Source:UniProtKB/TrEMBL;Acc:Q94JM4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.