Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013392.1-P | Field mustard | plastid | 64.84 | 69.14 |
| CDX99380 | Canola | plastid | 64.47 | 68.75 |
| GSMUA_Achr7P17350_001 | Banana | cytosol, extracellular, plasma membrane | 34.07 | 60.78 |
| CDY69061 | Canola | plastid | 31.87 | 57.24 |
| KRH76446 | Soybean | plastid | 48.72 | 50.38 |
| KRH39766 | Soybean | plastid | 48.35 | 50.0 |
| GSMUA_Achr1P10680_001 | Banana | plasma membrane | 37.0 | 49.75 |
| VIT_02s0087g00610.t01 | Wine grape | plastid | 45.42 | 49.01 |
| PGSC0003DMT400075309 | Potato | plastid | 44.69 | 48.8 |
| Solyc08g075280.2.1 | Tomato | plastid | 44.32 | 47.45 |
| Os06t0710300-01 | Rice | mitochondrion | 42.49 | 45.14 |
| Zm00001d014744_P001 | Maize | plastid | 41.39 | 45.02 |
| TraesCS7A01G407800.1 | Wheat | plastid | 41.76 | 43.51 |
| TraesCS7B01G308000.1 | Wheat | plastid | 41.03 | 42.91 |
| TraesCS7D01G401500.1 | Wheat | plastid | 41.03 | 42.91 |
| AT5G13720.1 | Thale cress | plastid | 29.3 | 30.53 |
| OQU77073 | Sorghum | plastid | 40.29 | 26.89 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827680 | ProteinID:AEE84175.1 | EMBL:AF378856 | ArrayExpress:AT4G19390 | EnsemblPlantsGene:AT4G19390 |
| RefSeq:AT4G19390 | TAIR:AT4G19390 | RefSeq:AT4G19390-TAIR-G | EnsemblPlants:AT4G19390.1 | TAIR:AT4G19390.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009536 | GO:GO:0009941 |
| GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_567583.1 | PFAM:PF03350 | PIRSF:PIRSF022348 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR31721 | PANTHER:PTHR31721:SF4 | UniProt:Q94JM4 | TMHMM:TMhelix | InterPro:UPF0114 | InterPro:UPF0114_pln |
| UniParc:UPI00000A12AF | SEG:seg | : | : | : | : |
Description
AT4g19390/T5K18_170 [Source:UniProtKB/TrEMBL;Acc:Q94JM4]
Coordinates
chr4:-:10574768..10576619
Molecular Weight (calculated)
30044.7 Da
IEP (calculated)
9.473
GRAVY (calculated)
0.381
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTPCRTINA NAIAAPSPSG LIFNGFRDFV PIEKRLVISS FRGLKLPSRT TKTITSSDWS WSYRSPGRLA SASTSTSAST STSAAVTSNS TNRFEALEEG
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.