CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76446	Soybean	plastid	87.5	87.5
GSMUA_Achr7P17350_001	Banana	cytosol, extracellular, plasma membrane	35.98	62.09
VIT_02s0087g00610.t01	Wine grape	plastid	54.55	56.92
CDX99380	Canola	plastid	52.65	54.3
Bra013392.1-P	Field mustard	plastid	52.27	53.91
GSMUA_Achr1P10680_001	Banana	plasma membrane	40.91	53.2
PGSC0003DMT400075309	Potato	plastid	47.73	50.4
Solyc08g075280.2.1	Tomato	plastid	47.73	49.41
AT4G19390.1	Thale cress	plastid	50.0	48.35
CDY69061	Canola	plastid	26.14	45.39
TraesCS7A01G407800.1	Wheat	plastid	44.32	44.66
TraesCS7D01G401500.1	Wheat	plastid	42.8	43.3
TraesCS7B01G308000.1	Wheat	plastid	42.05	42.53
Zm00001d014744_P001	Maize	plastid	39.02	41.04
Os06t0710300-01	Rice	mitochondrion	37.5	38.52
KRH13984	Soybean	plastid	34.09	33.83
OQU77073	Sorghum	plastid	35.61	22.98
KRG89511	Soybean	mitochondrion	23.86	21.58

Protein Annotations

EMBL:ACUP02005958	EnsemblPlants:KRH39766	EnsemblPlantsGene:GLYMA_09G217900	EntrezGene:100527423	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:UPF0114	InterPro:UPF0114_pln	PANTHER:PTHR31721	PANTHER:PTHR31721:SF4	PFAM:PF03350
PIRSF:PIRSF022348	ProteinID:KRH39766	ProteinID:KRH39766.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00023C99C4
UniProt:I1L5B6	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:44085855..44088919

Molecular Weight (calculated)

28720.5 Da

IEP (calculated)

9.285

GRAVY (calculated)

0.416

Length

264 amino acids

Sequence
(BLAST)

001: MKLSQALVRT PFSTTSPALL RTQNSILSSN GKRVFVLGYQ SLRLPSCACS NSGSAVSSSP AAAAKETNPS PLPHVASNSG YDSAVTLELP GKLEALEEGI
101: EKVIYRCRFM AILGVFGSLT GSFLCFIKGC TFVTASFMQY FVNRSKVIQT LIEAIDVYLL GTVMLVFGMG LYELFVSNLG VDQKPSHRSS LFGLFTLKER
201: PKWLDIKTVD ELKTKLGHVI VMLLLIGLFD KSKKAAIHTP VDLLCFCVSV LLSSSCLFLL SKLN

Best Arabidopsis Sequence Match ( AT4G19390.1 )
(BLAST)

001: MTTPCRTINA NAIAAPSPSG LIFNGFRDFV PIEKRLVISS FRGLKLPSRT TKTITSSDWS WSYRSPGRLA SASTSTSAST STSAAVTSNS TNRFEALEEG
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH

Arabidopsis Description

AT4g19390/T5K18_170 [Source:UniProtKB/TrEMBL;Acc:Q94JM4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.