CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P17350_001	Banana	cytosol, extracellular, plasma membrane	22.74	60.78
Zm00001d014744_P001	Maize	plastid	36.19	58.96
Os06t0710300-01	Rice	mitochondrion	33.25	52.92
GSMUA_Achr1P10680_001	Banana	plasma membrane	24.69	49.75
TraesCS7A01G407800.1	Wheat	plastid	31.54	49.24
TraesCS7D01G401500.1	Wheat	plastid	31.3	49.04
TraesCS7B01G308000.1	Wheat	plastid	31.05	48.66
CDX99380	Canola	plastid	26.16	41.8
Bra013392.1-P	Field mustard	plastid	25.92	41.41
AT4G19390.1	Thale cress	plastid	26.89	40.29
VIT_02s0087g00610.t01	Wine grape	plastid	23.96	38.74
Solyc08g075280.2.1	Tomato	plastid	23.47	37.65
PGSC0003DMT400075309	Potato	plastid	22.74	37.2
KRH39766	Soybean	plastid	22.98	35.61
KRH76446	Soybean	plastid	22.74	35.23
CDY69061	Canola	plastid	11.74	31.58
EER97649	Sorghum	plastid	20.05	30.83
EER93488	Sorghum	plastid	13.94	18.33

Protein Annotations

EnsemblPlants:OQU77073	EnsemblPlantsGene:SORBI_3010G259100	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:UPF0114
PANTHER:PTHR31721	PANTHER:PTHR31721:SF4	PFAM:PF03350	ProteinID:OQU77073	ProteinID:OQU77073.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0009DC8C27	UniProt:A0A1W0VUW0	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr10:-:59616184..59619167

Molecular Weight (calculated)

44068.5 Da

IEP (calculated)

10.799

GRAVY (calculated)

-0.071

Length

409 amino acids

Sequence
(BLAST)

001: MITQLLGPVN GQPNQSGSPT HTHTTRHGTS GRAVDRRVPV RVCGGGVRGR NGWPAGAQIS LNHASTSHPR MELSPSPTTT HHWATGADER APPPTWTRCQ
101: PRPATRRTRT TTGVSAPASA VQRTWRTTCR ALRRRLLNRP GSERSRETAV RLSVPATAMK PRPLDYGCGP AAAAAAGCAG WAWRPRPRGG GRSPGVSPKC
201: SNSPNSAAAA GAVHSEHHRR GDSVVLLRPV ELPGTGYGSE VEARIERVIF ACRFMTFLGI GGLLLGSVPC FLKGSVHVMN AFVDYYLHGG GKLILMLLEA
301: IEMFLIGTVT FVLGIGLYEL FISTIDSSYG SNLFGLFSLP DRPKWVEIKS LDDLKTKLGH VIVLVLLVGI FEKSKRVTIT SCTDLLCFAG SIFLCSVCLY
401: LLSRLNTSK

Best Arabidopsis Sequence Match ( AT4G19390.1 )
(BLAST)

001: MTTPCRTINA NAIAAPSPSG LIFNGFRDFV PIEKRLVISS FRGLKLPSRT TKTITSSDWS WSYRSPGRLA SASTSTSAST STSAAVTSNS TNRFEALEEG
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH

Arabidopsis Description

AT4g19390/T5K18_170 [Source:UniProtKB/TrEMBL;Acc:Q94JM4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.