Factsheet for VIT_02s0087g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P17350_001	Banana	cytosol, extracellular, plasma membrane	41.9	69.28
GSMUA_Achr1P10680_001	Banana	plasma membrane	47.43	59.11
KRH39766	Soybean	plastid	56.92	54.55
PGSC0003DMT400075309	Potato	plastid	53.36	54.0
KRH76446	Soybean	plastid	54.15	51.89
Solyc08g075280.2.1	Tomato	plastid	50.99	50.59
CDX99380	Canola	plastid	50.99	50.39
Bra013392.1-P	Field mustard	plastid	50.2	49.61
AT4G19390.1	Thale cress	plastid	49.01	45.42
Zm00001d014744_P001	Maize	plastid	44.66	45.02
TraesCS7A01G407800.1	Wheat	plastid	45.45	43.89
TraesCS7D01G401500.1	Wheat	plastid	44.27	42.91
Os06t0710300-01	Rice	mitochondrion	43.48	42.8
TraesCS7B01G308000.1	Wheat	plastid	43.87	42.53
CDY69061	Canola	plastid	23.32	38.82
VIT_13s0064g00200.t01	Wine grape	plastid	34.78	31.65
VIT_18s0001g11680.t01	Wine grape	mitochondrion	29.64	25.68
OQU77073	Sorghum	plastid	38.74	23.96

Protein Annotations

EntrezGene:100266665	wikigene:100266665	MapMan:35.2	ProteinID:CCB52226	ProteinID:CCB52226.1	UniProt:F6HJ29
EMBL:FN595769	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009536
GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100266665	wikigene:LOC100266665	PFAM:PF03350
PIRSF:PIRSF022348	PANTHER:PTHR31721	PANTHER:PTHR31721:SF4	TIGR:TC61146	TMHMM:TMhelix	InterPro:UPF0114
InterPro:UPF0114_pln	UniParc:UPI0001982C5F	ArrayExpress:VIT_02s0087g00610	EnsemblPlantsGene:VIT_02s0087g00610	EnsemblPlants:VIT_02s0087g00610.t01	unigene:Vvi.7221
RefSeq:XP_002272494	RefSeq:XP_002272494.1	:	:	:	:

Description

No Description!

Coordinates

chr2:+:18075981..18088517

Molecular Weight (calculated)

28237.0 Da

IEP (calculated)

8.956

GRAVY (calculated)

0.306

Length

253 amino acids

Sequence
(BLAST)

001: MKPPRFIFTK PTASLFIRTP NSPPNSQRLP HLWPSDIRFR SWKRPQIPSA AQSSSTAIAP EMSSGGMEDL PEKAEAVEGS IEKVIYGCRF LTLFGVWGSL
101: VGSILCFIKG CTYVAMSFME YFVNHTNVIL LLVEAIDVYL LGTVMLVFGM GLYELFVSNL DLAKSLPEER NQQRSSLFGL FTLQERPQWL EIKSVNELKT
201: KLGHVIVMLL LIGLFEKSKK AAILTPVDLL CFAASILLSS VCLYLLSKLH GSK

Best Arabidopsis Sequence Match ( AT4G19390.1 )
(BLAST)

001: MTTPCRTINA NAIAAPSPSG LIFNGFRDFV PIEKRLVISS FRGLKLPSRT TKTITSSDWS WSYRSPGRLA SASTSTSAST STSAAVTSNS TNRFEALEEG
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH

Arabidopsis Description

AT4g19390/T5K18_170 [Source:UniProtKB/TrEMBL;Acc:Q94JM4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.