Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P17350_001 | Banana | cytosol, extracellular, plasma membrane | 38.8 | 63.4 |
| Solyc08g075280.2.1 | Tomato | plastid | 62.8 | 61.57 |
| GSMUA_Achr1P10680_001 | Banana | plasma membrane | 46.8 | 57.64 |
| VIT_02s0087g00610.t01 | Wine grape | plastid | 54.0 | 53.36 |
| KRH76446 | Soybean | plastid | 51.2 | 48.48 |
| KRH39766 | Soybean | plastid | 50.4 | 47.73 |
| Bra013392.1-P | Field mustard | plastid | 47.6 | 46.48 |
| CDX99380 | Canola | plastid | 47.6 | 46.48 |
| AT4G19390.1 | Thale cress | plastid | 48.8 | 44.69 |
| Os06t0710300-01 | Rice | mitochondrion | 43.2 | 42.02 |
| TraesCS7D01G401500.1 | Wheat | plastid | 42.4 | 40.61 |
| TraesCS7B01G308000.1 | Wheat | plastid | 42.4 | 40.61 |
| TraesCS7A01G407800.1 | Wheat | plastid | 42.4 | 40.46 |
| Zm00001d014744_P001 | Maize | plastid | 39.2 | 39.04 |
| CDY69061 | Canola | plastid | 21.2 | 34.87 |
| OQU77073 | Sorghum | plastid | 37.2 | 22.74 |
| PGSC0003DMT400043513 | Potato | mitochondrion, plasma membrane | 25.6 | 21.77 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400075309 | EnsemblPlantsGene:PGSC0003DMG400029287 | EntrezGene:102588972 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:UPF0114 | InterPro:UPF0114_pln | PANTHER:PTHR31721 | PANTHER:PTHR31721:SF4 | PFAM:PF03350 | PGSC:PGSC0003DMG400029287 |
| PIRSF:PIRSF022348 | RefSeq:XP_006342485.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002954662 | UniProt:M1CUX8 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029287]
Coordinates
chr12:-:57934187..57937983
Molecular Weight (calculated)
28091.5 Da
IEP (calculated)
9.375
GRAVY (calculated)
0.310
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLTTSSLST NSISPIFYRN SKSASIIKWV PQFQPIRVKF RVDLSNGSAR FSHSSVRASS PAIQSDVDSK LQIVEENIEK VIYSCRFFAI LAVWGSLIGS
101: FLCFIKGCTY VTASFQEYFR SRANVILLLV EAIDIYLLGT VMLVFGMGLY ELFISNLDKS KSTSEENSPY QSNLFGMFTL KERPRWLEIK TISGMKTKVG
201: HVIVMLLLIG LFEKSKKAVI NTPLDLLCFS ASVLLCSGCL YLLSRLTEEH
101: FLCFIKGCTY VTASFQEYFR SRANVILLLV EAIDIYLLGT VMLVFGMGLY ELFISNLDKS KSTSEENSPY QSNLFGMFTL KERPRWLEIK TISGMKTKVG
201: HVIVMLLLIG LFEKSKKAVI NTPLDLLCFS ASVLLCSGCL YLLSRLTEEH
001: MTTPCRTINA NAIAAPSPSG LIFNGFRDFV PIEKRLVISS FRGLKLPSRT TKTITSSDWS WSYRSPGRLA SASTSTSAST STSAAVTSNS TNRFEALEEG
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH
Arabidopsis Description
AT4g19390/T5K18_170 [Source:UniProtKB/TrEMBL;Acc:Q94JM4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.