Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- extracellular 2
- peroxisome 1
- plastid 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P10680_001 | Banana | plasma membrane | 85.62 | 64.53 |
| TraesCS7B01G308000.1 | Wheat | plastid | 72.55 | 42.53 |
| TraesCS7D01G401500.1 | Wheat | plastid | 71.9 | 42.15 |
| Os06t0710300-01 | Rice | mitochondrion | 70.59 | 42.02 |
| TraesCS7A01G407800.1 | Wheat | plastid | 71.9 | 41.98 |
| VIT_02s0087g00610.t01 | Wine grape | plastid | 69.28 | 41.9 |
| Zm00001d014744_P001 | Maize | plastid | 68.63 | 41.83 |
| PGSC0003DMT400075309 | Potato | plastid | 63.4 | 38.8 |
| Solyc08g075280.2.1 | Tomato | plastid | 62.75 | 37.65 |
| Bra013392.1-P | Field mustard | plastid | 62.09 | 37.11 |
| CDX99380 | Canola | plastid | 62.09 | 37.11 |
| KRH76446 | Soybean | plastid | 62.09 | 35.98 |
| KRH39766 | Soybean | plastid | 62.09 | 35.98 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane | 45.75 | 35.71 |
| AT4G19390.1 | Thale cress | plastid | 60.78 | 34.07 |
| OQU77073 | Sorghum | plastid | 60.78 | 22.74 |
| CDY69061 | Canola | plastid | 22.22 | 22.37 |
| GSMUA_Achr7P27370_001 | Banana | mitochondrion | 26.8 | 12.46 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P17350_001 | EnsemblPlants:GSMUA_Achr7T17350_001 | EnsemblPlantsGene:GSMUA_Achr7G17350_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:UPF0114 | PANTHER:PTHR31721 | PANTHER:PTHR31721:SF4 | PFAM:PF03350 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000295E73D | UniProt:M0TIC2 | MapMan:35.2 | : | : | : |
Description
uncharacterized UPF0114 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G17350_001]
Coordinates
chr7:-:19507857..19510976
Molecular Weight (calculated)
16980.5 Da
IEP (calculated)
8.787
GRAVY (calculated)
0.735
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVICFLKG CTYVIDSFRE YFLSGGKVIL MLIEAIDIYL IGTVMLVFGM GLYELFISNL DIAKMSSYGS SLLGLFKLLE RPRWLDIQSV NELKTKLGHV
101: IVMVLLVGMF EKSKKVTISS TADLLYFAAS ILLSSSCLYL LSKLHTTKGS MHA
101: IVMVLLVGMF EKSKKVTISS TADLLYFAAS ILLSSSCLYL LSKLHTTKGS MHA
001: MTTPCRTINA NAIAAPSPSG LIFNGFRDFV PIEKRLVISS FRGLKLPSRT TKTITSSDWS WSYRSPGRLA SASTSTSAST STSAAVTSNS TNRFEALEEG
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH
Arabidopsis Description
AT4g19390/T5K18_170 [Source:UniProtKB/TrEMBL;Acc:Q94JM4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.