Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- peroxisome 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075309 | Potato | plastid | 61.57 | 62.8 |
| GSMUA_Achr7P17350_001 | Banana | cytosol, extracellular, plasma membrane | 37.65 | 62.75 |
| GSMUA_Achr1P10680_001 | Banana | plasma membrane | 43.92 | 55.17 |
| VIT_02s0087g00610.t01 | Wine grape | plastid | 50.59 | 50.99 |
| Bra013392.1-P | Field mustard | plastid | 48.63 | 48.44 |
| CDX99380 | Canola | plastid | 48.63 | 48.44 |
| KRH39766 | Soybean | plastid | 49.41 | 47.73 |
| KRH76446 | Soybean | plastid | 49.02 | 47.35 |
| AT4G19390.1 | Thale cress | plastid | 47.45 | 44.32 |
| Os06t0710300-01 | Rice | mitochondrion | 41.57 | 41.25 |
| TraesCS7A01G407800.1 | Wheat | plastid | 41.57 | 40.46 |
| TraesCS7D01G401500.1 | Wheat | plastid | 40.78 | 39.85 |
| TraesCS7B01G308000.1 | Wheat | plastid | 40.0 | 39.08 |
| Zm00001d014744_P001 | Maize | plastid | 38.04 | 38.65 |
| CDY69061 | Canola | plastid | 22.35 | 37.5 |
| Solyc01g087710.2.1 | Tomato | nucleus | 29.02 | 33.64 |
| Solyc01g087680.2.1 | Tomato | plastid | 32.16 | 30.26 |
| OQU77073 | Sorghum | plastid | 37.65 | 23.47 |
| Solyc04g079760.2.1 | Tomato | mitochondrion, plasma membrane | 25.49 | 22.18 |
Protein Annotations
| EnsemblPlants:Solyc08g075280.2.1 | EnsemblPlantsGene:Solyc08g075280.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:UPF0114 |
| PANTHER:PTHR31721 | PANTHER:PTHR31721:SF4 | PFAM:PF03350 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000276B4FA |
| UniProt:K4CMP5 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr8:+:59380932..59383850
Molecular Weight (calculated)
28099.8 Da
IEP (calculated)
8.887
GRAVY (calculated)
0.477
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPCTRGLST NVKAPILFLK NSKSASFVKW APLFKCSPVV ALSTARCSHS TVHAPSSPVI QSDSNSTVLH IPEEKFEGVE KTLEKVIYSC RFFAILAVWG
101: SLIGSFLCFI KGCSCVIASF QGYFASRANV IVHLVEAIDI YLLGTVMLVF GMGLYELFIS NLDKGKSMSG ETTPYRSNLF GMFTLKERPR WLEITTVSGL
201: KTKIGHVIVM LLLIGLFDKS KKAVIHSPFD LLCFAASVLL CSCCLYLLSR LTDEN
101: SLIGSFLCFI KGCSCVIASF QGYFASRANV IVHLVEAIDI YLLGTVMLVF GMGLYELFIS NLDKGKSMSG ETTPYRSNLF GMFTLKERPR WLEITTVSGL
201: KTKIGHVIVM LLLIGLFDKS KKAVIHSPFD LLCFAASVLL CSCCLYLLSR LTDEN
001: MTTPCRTINA NAIAAPSPSG LIFNGFRDFV PIEKRLVISS FRGLKLPSRT TKTITSSDWS WSYRSPGRLA SASTSTSAST STSAAVTSNS TNRFEALEEG
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH
Arabidopsis Description
AT4g19390/T5K18_170 [Source:UniProtKB/TrEMBL;Acc:Q94JM4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.