Factsheet for VIT_18s0001g11680.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
peroxisome 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89511	Soybean	mitochondrion	45.55	45.55
Solyc04g079760.2.1	Tomato	mitochondrion, plasma membrane	41.78	41.64
PGSC0003DMT400043513	Potato	mitochondrion, plasma membrane	40.41	40.14
CDY52071	Canola	mitochondrion	37.33	39.35
Bra027440.1-P	Field mustard	mitochondrion	36.64	38.63
CDY63350	Canola	mitochondrion	35.96	38.32
TraesCS5B01G383400.1	Wheat	mitochondrion	35.62	35.37
TraesCS5A01G379800.1	Wheat	plastid	35.62	34.78
TraesCS5D01G389300.1	Wheat	mitochondrion, plastid	35.62	34.78
EER93488	Sorghum	plastid	36.3	34.08
HORVU5Hr1G093860.2	Barley	plastid	33.9	32.57
GSMUA_Achr7P27370_001	Banana	mitochondrion	36.64	32.52
Os03t0739700-01	Rice	plastid	36.64	31.1
VIT_02s0087g00610.t01	Wine grape	plastid	25.68	29.64
VIT_13s0064g00200.t01	Wine grape	plastid	26.37	27.7

Protein Annotations

EntrezGene:100245440	wikigene:100245440	MapMan:35.2	ProteinID:CBI19619	ProteinID:CBI19619.3	UniProt:E0CPX3
EMBL:FN595227	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100245440	wikigene:LOC100245440
PFAM:PF03350	PANTHER:PTHR31721	PANTHER:PTHR31721:SF3	TMHMM:TMhelix	InterPro:UPF0114	UniParc:UPI0001BE1A71
ArrayExpress:VIT_18s0001g11680	EnsemblPlantsGene:VIT_18s0001g11680	EnsemblPlants:VIT_18s0001g11680.t01	RefSeq:XP_002281932	RefSeq:XP_002281932.1	RefSeq:XP_010664633.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:9946884..9949051

Molecular Weight (calculated)

31375.9 Da

IEP (calculated)

10.287

GRAVY (calculated)

0.503

Length

292 amino acids

Sequence
(BLAST)

001: MATTRLLGAS RRLSSSSLRL NNVLSPSTST SLRCLSKAGM TGDKILSGDG NRRSMVALKA SVAASESVIT SDPQANGGES LASLLASTAN AVLKVVRQTV
101: NSKPPKLQVQ MFLERIIVNC RFFTLFAVAG SLIGSVLCFI EGCFMILESY FQYFHTLAQS SDQGHVMKLL FEAIDMFLLG TVMLVFGMGL HVMFVGSKTM
201: QGKGQWLSDS NLFGLFSLRT IPTWVRIQSV SQAKSRIGHA IMMILQVGVL EKFQSIPLAT GLDLACAAGA ILVSSACVFL LSRLFILDSA AK

Best Arabidopsis Sequence Match ( AT4G19390.1 )
(BLAST)

001: MTTPCRTINA NAIAAPSPSG LIFNGFRDFV PIEKRLVISS FRGLKLPSRT TKTITSSDWS WSYRSPGRLA SASTSTSAST STSAAVTSNS TNRFEALEEG
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH

Arabidopsis Description

AT4g19390/T5K18_170 [Source:UniProtKB/TrEMBL;Acc:Q94JM4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.