Factsheet for VIT_13s0064g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	58.27	82.65
Solyc01g087710.2.1	Tomato	nucleus	58.99	74.55
Solyc01g087680.2.1	Tomato	plastid	66.19	67.9
KRH13984	Soybean	plastid	64.75	67.67
AT5G13720.1	Thale cress	plastid	62.95	66.79
CDX85631	Canola	plastid	64.03	66.17
Bra023431.1-P	Field mustard	plastid	63.31	65.43
CDX91101	Canola	plastid	63.31	65.43
Bra008808.1-P	Field mustard	plastid	60.79	62.59
CDY09825	Canola	plastid	60.43	62.45
CDY65989	Canola	plastid	60.79	62.36
Zm00001d022371_P001	Maize	plastid	58.63	61.28
EER97649	Sorghum	plastid	58.63	61.28
Zm00001d007072_P001	Maize	plastid	57.19	60.69
Os07t0656600-01	Rice	plasma membrane, plastid	55.76	58.27
TraesCS2A01G133900.1	Wheat	mitochondrion	57.55	56.94
TraesCS2D01G136100.1	Wheat	mitochondrion	57.91	56.69
TraesCS2B01G157500.1	Wheat	mitochondrion	57.55	56.34
Os07t0656700-01	Rice	mitochondrion, plastid	57.55	55.94
HORVU2Hr1G023480.3	Barley	plastid	58.27	47.93
VIT_02s0087g00610.t01	Wine grape	plastid	31.65	34.78
VIT_18s0001g11680.t01	Wine grape	mitochondrion	27.7	26.37

Protein Annotations

EntrezGene:100267159	wikigene:100267159	MapMan:35.2	ProteinID:CBI24960	ProteinID:CBI24960.3	UniProt:D7T379
EMBL:FN595509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100267159	wikigene:LOC100267159
PFAM:PF03350	PIRSF:PIRSF022348	PANTHER:PTHR31721	PANTHER:PTHR31721:SF1	TMHMM:TMhelix	InterPro:UPF0114
InterPro:UPF0114_pln	UniParc:UPI0001984806	ArrayExpress:VIT_13s0064g00200	EnsemblPlantsGene:VIT_13s0064g00200	EnsemblPlants:VIT_13s0064g00200.t01	unigene:Vvi.1268
RefSeq:XP_002274669	RefSeq:XP_002274669.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:-:21698051..21703816

Molecular Weight (calculated)

30504.7 Da

IEP (calculated)

9.596

GRAVY (calculated)

0.299

Length

278 amino acids

Sequence
(BLAST)

001: MALFAAMSYT PLSLSLSRLR PPTNHRRFSP CLASVSSSSH ESSPPPPPPS PPTETILSSN PPSKPLVESS RPLNSTYNYA LPDPKASPIV RFVRYSESSI
101: ERVIFDFRFL ALLAVGGSLA GSLLCFLNGC VYIVDAYKVY WTSCVKGIHT GKMVLRLVEA IDVYLAGTVM LIFGMGLYGL FISNVPPDVP PSVDRALKGS
201: SLFGMFALKE RPKWMKISSL DELKTKVGHV IVMILLVKMF ERSKMVTIAT GMDLLSYSVC IFLSSASLYI LNNLHKAE

Best Arabidopsis Sequence Match ( AT5G13720.1 )
(BLAST)

001: MALSSLISAT PLSLSVPRYL VLPTRRRFHL PLATLDSSPP ESSASSSIPT SIPVNGNTLP SSYGTRKDDS PFAQFFRSTE SNVERIIFDF RFLALLAVGG
101: SLAGSLLCFL NGCVYIVEAY KVYWTNCSKG IHTGQMVLRL VEAIDVYLAG TVMLIFSMGL YGLFISHSPH DVPPESDRAL RSSSLFGMFA MKERPKWMKI
201: SSLDELKTKV GHVIVMILLV KMFERSKMVT IATGLDLLSY SVCIFLSSAS LYILHNLHKG ET

Arabidopsis Description

Uncharacterized protein At5g13720 [Source:UniProtKB/TrEMBL;Acc:Q9FNA1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.