CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008808.1-P	Field mustard	plastid	98.16	98.52
CDY09825	Canola	plastid	97.05	97.77
CDX85631	Canola	plastid	88.19	88.85
CDX91101	Canola	plastid	84.87	85.5
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	56.46	78.06
Solyc01g087710.2.1	Tomato	nucleus	59.78	73.64
AT5G13720.1	Thale cress	plastid	70.85	73.28
KRH13984	Soybean	plastid	61.99	63.16
Solyc01g087680.2.1	Tomato	plastid	61.25	61.25
VIT_13s0064g00200.t01	Wine grape	plastid	62.36	60.79
CDY09866	Canola	mitochondrion	36.53	48.53
CDX99380	Canola	plastid	31.37	33.2
CDY69061	Canola	plastid	16.61	29.61
CDY63350	Canola	mitochondrion	23.99	23.72
CDY52071	Canola	mitochondrion	23.99	23.47

Protein Annotations

EnsemblPlants:CDY65989	EnsemblPlantsGene:GSBRNA2T00051128001	GO:A0A078JGZ4	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:UPF0114	InterPro:UPF0114_pln	PANTHER:PTHR31721	PANTHER:PTHR31721:SF1	PFAM:PF03350	PIRSF:PIRSF022348
ProteinID:CDY65989	ProteinID:CDY65989.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDF2D0	UniProt:A0A078JGZ4
MapMan:35.2	:	:	:	:	:

Description

BnaA10g29840DBnaA10g29840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGZ4]

Coordinates

chrLK035032:-:280..1697

Molecular Weight (calculated)

29728.5 Da

IEP (calculated)

9.312

GRAVY (calculated)

0.338

Length

271 amino acids

Sequence
(BLAST)

001: MANLYTLASA ARLSVSLPNP HLLPTRRRFH LPLATLASSS SPESSSASST PPSSIPVVNG NTLSSSYGTR DKVVVDDNSL FARFFRSTES TVEKIIFDFR
101: FLALLAVGGS LAGSLLCFLN GCVYVMEAYK VYWTNCVKGI HKGQMVLHLV EAIDVYLAGT VMLIFSMGLY GLFISNSPSD IPPESDRALK ASSLFGMFAM
201: KERPKWMKIS SLDELKTKVG HVIVMILLVK MFERSKMVTI ATGLDLLSYS VCIFLSSASL YILHNLHKGE H

Best Arabidopsis Sequence Match ( AT5G13720.1 )
(BLAST)

001: MALSSLISAT PLSLSVPRYL VLPTRRRFHL PLATLDSSPP ESSASSSIPT SIPVNGNTLP SSYGTRKDDS PFAQFFRSTE SNVERIIFDF RFLALLAVGG
101: SLAGSLLCFL NGCVYIVEAY KVYWTNCSKG IHTGQMVLRL VEAIDVYLAG TVMLIFSMGL YGLFISHSPH DVPPESDRAL RSSSLFGMFA MKERPKWMKI
201: SSLDELKTKV GHVIVMILLV KMFERSKMVT IATGLDLLSY SVCIFLSSAS LYILHNLHKG ET

Arabidopsis Description

Uncharacterized protein At5g13720 [Source:UniProtKB/TrEMBL;Acc:Q9FNA1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.