CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027440.1-P	Field mustard	mitochondrion	98.56	98.56
CDY63350	Canola	mitochondrion	93.14	94.16
KRG89511	Soybean	mitochondrion	39.71	37.67
VIT_18s0001g11680.t01	Wine grape	mitochondrion	39.35	37.33
PGSC0003DMT400043513	Potato	mitochondrion, plasma membrane	35.38	33.33
Solyc04g079760.2.1	Tomato	mitochondrion, plasma membrane	34.3	32.42
TraesCS5B01G383400.1	Wheat	mitochondrion	29.24	27.55
GSMUA_Achr7P27370_001	Banana	mitochondrion	31.77	26.75
TraesCS5D01G389300.1	Wheat	mitochondrion, plastid	28.52	26.42
CDY69061	Canola	plastid	14.44	26.32
TraesCS5A01G379800.1	Wheat	plastid	27.8	25.75
HORVU5Hr1G093860.2	Barley	plastid	27.8	25.33
CDX85631	Canola	plastid	23.83	24.54
CDY09825	Canola	plastid	23.47	24.16
CDY65989	Canola	plastid	23.47	23.99
EER93488	Sorghum	plastid	26.71	23.79
CDX91101	Canola	plastid	23.1	23.79
Os03t0739700-01	Rice	plastid	28.88	23.26
CDX99380	Canola	plastid	19.86	21.48
CDY09866	Canola	mitochondrion	15.16	20.59

Protein Annotations

EnsemblPlants:CDY52071	EnsemblPlantsGene:GSBRNA2T00004802001	GO:A0A078IQ64	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:UPF0114	PANTHER:PTHR31721	PANTHER:PTHR31721:SF3	PFAM:PF03350	ProteinID:CDY52071	ProteinID:CDY52071.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDB6B4	UniProt:A0A078IQ64	MapMan:35.2	:

Description

BnaA09g53430DBnaA09g53430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQ64]

Coordinates

chrLK033053:-:41606..44765

Molecular Weight (calculated)

31046.4 Da

IEP (calculated)

10.468

GRAVY (calculated)

0.126

Length

277 amino acids

Sequence
(BLAST)

001: MTTTRLLLRR NSKPSDLFRP SSSSSLSPSC SLSRTRILKC SLGGQNQKPP IKDKDRKSSV EVKAYVPTSE IVIKSKTEVR RGLMDSVFLV SQVTDIFITE
101: LRQAIKRRAW KLQLQRNIER VILDCRFYTL FAVAGTLLGS VLCFFEGCSR VLECYSHYLK GLSHGVKSNT VHILIEAIDM FLFGTSMLVL GNAFYNMFVS
201: CKTNQSNQSI GEVKARIGYA VVMILNVGMM EKFKTTPLVT CMDLACFAAS LFILSASMFL LSRLSSSLRT RKTGERV

Best Arabidopsis Sequence Match ( AT4G19390.1 )
(BLAST)

001: MTTPCRTINA NAIAAPSPSG LIFNGFRDFV PIEKRLVISS FRGLKLPSRT TKTITSSDWS WSYRSPGRLA SASTSTSAST STSAAVTSNS TNRFEALEEG
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH

Arabidopsis Description

AT4g19390/T5K18_170 [Source:UniProtKB/TrEMBL;Acc:Q94JM4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.