CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G379800.1	Wheat	plastid	57.56	59.87
TraesCS5D01G389300.1	Wheat	mitochondrion, plastid	57.56	59.87
TraesCS5B01G383400.1	Wheat	mitochondrion	54.98	58.16
HORVU5Hr1G093860.2	Barley	plastid	56.27	57.57
Os03t0739700-01	Rice	plastid	56.91	51.45
VIT_18s0001g11680.t01	Wine grape	mitochondrion	34.08	36.3
KRG89511	Soybean	mitochondrion	32.15	34.25
GSMUA_Achr7P27370_001	Banana	mitochondrion	33.76	31.91
PGSC0003DMT400043513	Potato	mitochondrion, plasma membrane	29.58	31.29
Solyc04g079760.2.1	Tomato	mitochondrion, plasma membrane	28.62	30.38
CDY63350	Canola	mitochondrion	23.79	27.01
CDY52071	Canola	mitochondrion	23.79	26.71
Bra027440.1-P	Field mustard	mitochondrion	23.47	26.35
EER97649	Sorghum	plastid	19.94	23.31
OQU77073	Sorghum	plastid	18.33	13.94

Protein Annotations

EnsemblPlants:EER93488	EnsemblPlantsGene:SORBI_3001G096800	EntrezGene:8085968	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:UPF0114	PANTHER:PTHR31721	PANTHER:PTHR31721:SF3	PFAM:PF03350	ProteinID:EER93488	ProteinID:EER93488.1
RefSeq:XP_002466490.1	SEG:seg	TMHMM:TMhelix	unigene:Sbi.6389	UniParc:UPI0001A826FF	UniProt:C5X1A9
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:7442339..7444186

Molecular Weight (calculated)

33941.3 Da

IEP (calculated)

10.527

GRAVY (calculated)

0.297

Length

311 amino acids

Sequence
(BLAST)

001: MTVASGRLLR ATSKAFQTDR NLPSPSTSGN TTPYCIPSLK FPFLWEAKKP PHMISRGAEQ RAALITLGAA SITPVKKQGV FLSESEMKSI DLLLPLAYEI
101: TRRMILRKIG AAQLALAGQC WPKIIERMIH QVIINCQSFT LIGVAGSLVG SVPLFAEGCA VVMKSFFMRF HAMSHTVDQG ETIRLLIEAL DMFLIGTALL
201: TFGMGMYTMF YGSQSIQQQA RHVDTSHLGA FNLKKLKEGA RIRSVTQAKT RISHAILLLL QVGVLEKFKS VPLLTGLDMA CFGGAVLASS ASVFLLSKLY
301: MGQQGLKQTV T

Best Arabidopsis Sequence Match ( AT4G19390.1 )
(BLAST)

001: MTTPCRTINA NAIAAPSPSG LIFNGFRDFV PIEKRLVISS FRGLKLPSRT TKTITSSDWS WSYRSPGRLA SASTSTSAST STSAAVTSNS TNRFEALEEG
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH

Arabidopsis Description

AT4g19390/T5K18_170 [Source:UniProtKB/TrEMBL;Acc:Q94JM4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.