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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 3
  • mitochondrion 5
  • peroxisome 1
  • nucleus 1
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:endoplasmic reticulum, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:nucleus, peroxisome
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:endoplasmic reticulum
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52071 Canola mitochondrion 98.56 98.56
KRG89511 Soybean mitochondrion 39.71 37.67
VIT_18s0001g11680.t01 Wine grape mitochondrion 38.63 36.64
PGSC0003DMT400043513 Potato mitochondrion, plasma membrane 34.66 32.65
Solyc04g079760.2.1 Tomato mitochondrion, plasma membrane 33.57 31.74
TraesCS5B01G383400.1 Wheat mitochondrion 28.88 27.21
GSMUA_Achr7P27370_001 Banana mitochondrion 31.77 26.75
TraesCS5D01G389300.1 Wheat mitochondrion, plastid 28.16 26.09
TraesCS5A01G379800.1 Wheat plastid 27.44 25.42
HORVU5Hr1G093860.2 Barley plastid 27.44 25.0
Bra023431.1-P Field mustard plastid 23.83 24.54
Bra008808.1-P Field mustard plastid 23.83 24.44
EER93488 Sorghum plastid 26.35 23.47
Os03t0739700-01 Rice plastid 28.52 22.97
Bra013392.1-P Field mustard plastid 20.58 22.27
Protein Annotations
EnsemblPlants:Bra027440.1EnsemblPlants:Bra027440.1-PEnsemblPlantsGene:Bra027440GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:UPF0114PANTHER:PTHR31721PANTHER:PTHR31721:SF3PFAM:PF03350SEG:segTMHMM:TMhelix
UniParc:UPI000254216EUniProt:M4EF78MapMan:35.2:::
Description
AT4G19390 (E=5e-015) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022348 (InterPro:IPR016804), Uncharacterised protein family UPF0114 (InterPro:IPR005134); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13720.1); Has 553 Blast hits to 553 proteins in 219 species: Archae - 18; Bacteria - 407; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Coordinates
chrA09:-:14283905..14285690
Molecular Weight (calculated)
31085.4 Da
IEP (calculated)
10.468
GRAVY (calculated)
0.119
Length
277 amino acids
Sequence
(BLAST)
001: MTTTRLLLRR NSKPSDLFRP SSSSSSSPSC TLSRTRILKC SLGGQNQKPP IKDKDRKSSV EVKAYVPTSE IVIKSKTEVR RGLMDSVFLV SQVTDIFITE
101: LRQAIKRRAW KLQLQRNIER VILDCRFYTL FAVVGTLLGS VLCFFEGCSR VLECYSHYLK GLSHGVKSNT VHILIEAIDM FLFGTSMLVL GNAFYNMFVS
201: CKTNQSNQSI GEVKARIGYA VVMILHVGMM EKFKTTPLVT CMDLACFAAS LFILSASMFL LSRLSSSLRT RKTGERV
Best Arabidopsis Sequence Match ( AT4G19390.1 )
(BLAST)
001: MTTPCRTINA NAIAAPSPSG LIFNGFRDFV PIEKRLVISS FRGLKLPSRT TKTITSSDWS WSYRSPGRLA SASTSTSAST STSAAVTSNS TNRFEALEEG
101: IEKVIYSCRF MTFLGTLGSL LGSVLCFIKG CMYVVDSFLQ YSVNRGKVIF LLVEAIDIYL LGTVMLVFGL GLYELFISNL DTSESRTHDI VSNRSSLFGM
201: FTLKERPQWL EVKSVSELKT KLGHVIVMLL LIGLFDKSKR VVITSVTDLL CISVSIFFSS ACLFLLSRLN GSH
Arabidopsis Description
AT4g19390/T5K18_170 [Source:UniProtKB/TrEMBL;Acc:Q94JM4]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.