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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 4
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX85631 Canola plastid 97.4 97.4
Bra008808.1-P Field mustard plastid 88.48 88.15
GSMUA_Achr11P... Banana extracellular, plasma membrane 57.99 79.59
Solyc01g087710.2.1 Tomato nucleus 60.97 74.55
AT5G13720.1 Thale cress plastid 71.75 73.66
KRH13984 Soybean plastid 63.57 64.29
VIT_13s0064g00200.t01 Wine grape plastid 65.43 63.31
Zm00001d022371_P001 Maize plastid 61.34 62.03
Solyc01g087680.2.1 Tomato plastid 62.45 61.99
EER97649 Sorghum plastid 60.97 61.65
Zm00001d007072_P001 Maize plastid 59.85 61.45
Os07t0656600-01 Rice plasma membrane, plastid 59.11 59.77
Os07t0656700-01 Rice mitochondrion, plastid 61.34 57.69
TraesCS2A01G133900.1 Wheat mitochondrion 60.22 57.65
TraesCS2B01G157500.1 Wheat mitochondrion 60.22 57.04
TraesCS2D01G136100.1 Wheat mitochondrion 60.22 57.04
HORVU2Hr1G023480.3 Barley plastid 60.97 48.52
Bra013392.1-P Field mustard plastid 31.23 32.81
Bra027440.1-P Field mustard mitochondrion 24.54 23.83
Protein Annotations
EnsemblPlants:Bra023431.1EnsemblPlants:Bra023431.1-PEnsemblPlantsGene:Bra023431GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:UPF0114InterPro:UPF0114_plnPANTHER:PTHR31721PANTHER:PTHR31721:SF1PFAM:PF03350PIRSF:PIRSF022348
SEG:segTMHMM:TMhelixUniParc:UPI00025434FAUniProt:M4E3S8MapMan:35.2:
Description
AT5G13720 (E=3e-101) | LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022348 (InterPro:IPR016804), Uncharacterised protein family UPF0114 (InterPro:IPR005134); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19390.1); Has 294 Blast hits to 294 proteins in 98 species: Archae - 18; Bacteria - 168; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Coordinates
chrA02:+:3345411..3346593
Molecular Weight (calculated)
29707.2 Da
IEP (calculated)
9.474
GRAVY (calculated)
0.281
Length
269 amino acids
Sequence
(BLAST)
001: MAALYTLVSS TRLSVSLPYH RNLHTRRRFH FPLATLASSS SPDSSASSNS SSIPVANGNT LSNSYGTHDK VVDDNSSLFA RFFRSTESNV ERIIFDFRFL
101: ALLAVGGSLA GSLLCFLNGC VYIIEAYKVY WTNCVKGIHT GKMVLRLVEA IDVYLAGTVM LIFSMGLYGL FISNSPPDVP SESDRALKAS SLFGMFAMKE
201: RPKWMKISSL DELKTKVGHV IVMILLVKMF ERSKMVTIAT GLDLLSYSVC IFLSSASLYI LHNLHKGEN
Best Arabidopsis Sequence Match ( AT5G13720.1 )
(BLAST)
001: MALSSLISAT PLSLSVPRYL VLPTRRRFHL PLATLDSSPP ESSASSSIPT SIPVNGNTLP SSYGTRKDDS PFAQFFRSTE SNVERIIFDF RFLALLAVGG
101: SLAGSLLCFL NGCVYIVEAY KVYWTNCSKG IHTGQMVLRL VEAIDVYLAG TVMLIFSMGL YGLFISHSPH DVPPESDRAL RSSSLFGMFA MKERPKWMKI
201: SSLDELKTKV GHVIVMILLV KMFERSKMVT IATGLDLLSY SVCIFLSSAS LYILHNLHKG ET
Arabidopsis Description
Uncharacterized protein At5g13720 [Source:UniProtKB/TrEMBL;Acc:Q9FNA1]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.