Factsheet for Zm00001d007072_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plasma membrane

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97649	Sorghum	plastid	84.35	83.08
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	58.4	78.06
Zm00001d022371_P001	Maize	plastid	78.63	77.44
Solyc01g087710.2.1	Tomato	nucleus	57.63	68.64
Os07t0656700-01	Rice	mitochondrion, plastid	69.47	63.64
TraesCS2A01G133900.1	Wheat	mitochondrion	67.94	63.35
TraesCS2B01G157500.1	Wheat	mitochondrion	67.56	62.32
TraesCS2D01G136100.1	Wheat	mitochondrion	67.18	61.97
KRH13984	Soybean	plastid	61.83	60.9
AT5G13720.1	Thale cress	plastid	59.92	59.92
Bra023431.1-P	Field mustard	plastid	61.45	59.85
Solyc01g087680.2.1	Tomato	plastid	61.45	59.41
Bra008808.1-P	Field mustard	plastid	60.69	58.89
VIT_13s0064g00200.t01	Wine grape	plastid	60.69	57.19
HORVU2Hr1G023480.3	Barley	plastid	69.08	53.55
CDY09866	Canola	mitochondrion	27.1	34.8
Zm00001d014744_P001	Maize	plastid	27.48	28.69

Protein Annotations

EMBL:BT061629	EnsemblPlants:Zm00001d007072_P001	EnsemblPlants:Zm00001d007072_T001	EnsemblPlantsGene:Zm00001d007072	EntrezGene:100381563	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:UPF0114	InterPro:UPF0114_pln	PANTHER:PTHR31721	PANTHER:PTHR31721:SF1
PFAM:PF03350	PIRSF:PIRSF022348	ProteinID:ONM25720.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00019486AB
UniProt:C0HH23	MapMan:35.2	:	:	:	:

Description

Uncharacterised protein family (UPF0114)

Coordinates

chr2:+:221453612..221455343

Molecular Weight (calculated)

27764.2 Da

IEP (calculated)

9.154

GRAVY (calculated)

0.497

Length

262 amino acids

Sequence
(BLAST)

001: MALLVLRAPA AVHAASRLLP PQPRRRRRLV AVASAASSAP SGEVSSQHGG GGGGGYGIVG GPNGNAVVPA TKSTVVETTV ERVIFDFRFL ALLAVAGSLA
101: GSLLCFLNGC VFIKEAYQVY WSSCVKGVHT GQMVLKVVEA IDVYLAGTVM LIFGMGLYGL FVSNASAGVG SESDRALSGS SLFGMFALKE RPKWMKITSL
201: DELKTIVGHV IVMILLVKMF ERSKMVTIAT GLDLLSYSIC IFLSSASLYI LHNLHKGDDH EE

Best Arabidopsis Sequence Match ( AT5G13720.1 )
(BLAST)

001: MALSSLISAT PLSLSVPRYL VLPTRRRFHL PLATLDSSPP ESSASSSIPT SIPVNGNTLP SSYGTRKDDS PFAQFFRSTE SNVERIIFDF RFLALLAVGG
101: SLAGSLLCFL NGCVYIVEAY KVYWTNCSKG IHTGQMVLRL VEAIDVYLAG TVMLIFSMGL YGLFISHSPH DVPPESDRAL RSSSLFGMFA MKERPKWMKI
201: SSLDELKTKV GHVIVMILLV KMFERSKMVT IATGLDLLSY SVCIFLSSAS LYILHNLHKG ET

Arabidopsis Description

Uncharacterized protein At5g13720 [Source:UniProtKB/TrEMBL;Acc:Q9FNA1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.