Factsheet for Solyc12g010870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g085000.2.1
Solyc03g083000.2.1
Solyc05g015640.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31040.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT2G31040.1	Solyc03g083000.2.1	AT2G46550.1	21798944
AT2G31040.1	Solyc02g085000.2.1	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020320	Potato	plastid	93.86	94.69
Solyc07g055050.2.1	Tomato	plastid	69.59	70.41
KRH55746	Soybean	plastid	64.91	66.27
VIT_12s0028g02170.t01	Wine grape	plastid	64.33	65.09
CDY58985	Canola	plastid	61.99	62.72
Bra021688.1-P	Field mustard	plastid	61.7	62.43
CDX97768	Canola	plastid	61.4	62.13
AT2G31040.1	Thale cress	plastid	61.99	60.57
GSMUA_Achr8P27290_001	Banana	plastid	60.53	59.65
Os01t0673800-01	Rice	mitochondrion	57.31	53.85
TraesCS3D01G271200.1	Wheat	mitochondrion	54.97	51.93
TraesCS3A01G271600.2	Wheat	mitochondrion	54.68	51.66
TraesCS3B01G305300.1	Wheat	mitochondrion	54.68	51.66
KXG33095	Sorghum	mitochondrion, plastid	55.56	51.63
Zm00001d011569_P001	Maize	plastid	54.97	51.51
CDX84806	Canola	extracellular, plasma membrane, plastid	15.79	46.15
HORVU1Hr1G066500.1	Barley	plastid	13.74	26.86

Protein Annotations

EnsemblPlants:Solyc12g010870.1.1	EnsemblPlantsGene:Solyc12g010870.1	ncoils:Coil	PANTHER:PTHR34118	PANTHER:PTHR34118:SF3	SEG:seg
UniParc:UPI0002769FF3	UniProt:K4DCH3	MapMan:1.1.9.3.1	:	:	:

Description

No Description!

Coordinates

chr12:+:3785577..3790200

Molecular Weight (calculated)

37914.8 Da

IEP (calculated)

9.718

GRAVY (calculated)

-0.346

Length

342 amino acids

Sequence
(BLAST)

001: MAVLNCYYLS VTSTATPKSQ ESASNSSPTQ KLPTKVILPK KKPMKWSTGD APGEYGGPPT TTKLRKYWGE DKDPLTSDDF IWNKEFMGRM KKYVQDPQEK
101: DTVSRFSPAK EESSGFLSLN RVMSLDSMEI DLTKKLITPS KPTLDAEVEE NKASVSASQK WRPAPTRREQ EKWVRAAKAA TGGSEVLLRE TRRSQEDPNI
201: LAAQSEEQYL KLKDKLQLLT LRIGGVGIVS AYVSYSPEIA ASYGAGLLGS LMYMRMLGNS VDSLRTDGPK ALIKGAVGQP RLLVPVVLVM IYNRWNGILS
301: VEYGLMHLEL IPMLVGFFTY KIATFAQAIE EAVTIVGKKT ET

Best Arabidopsis Sequence Match ( AT2G31040.1 )
(BLAST)

001: MAILSYISAT STTPPIPQDQ SPNSRLPTKI ILPNKKPEKW STGVAPGEYG GPPTTTKLRK YWGGEKEDPI TSTDLIWNRD FMDQMKKLFD DPNDSSLDPS
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD

Arabidopsis Description

CGL160Protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82279]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.