CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73773
CDX77962
CDX80028
CDX84933
CDX90677
CDY03907
CDY15722
CDY27317
CDY27605
CDY28989
CDY56879
CDY61731
CDY67893

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31040.1	CDX84933	AT1G27300.1	21798944
AT2G31040.1	CDY03907	AT1G27300.1	21798944
AT2G31040.1	CDY15722	AT1G27300.1	21798944
AT2G31040.1	CDY27605	AT1G27300.1	21798944
AT2G31040.1	CDX80028	AT2G46550.1	21798944
AT2G31040.1	CDY27317	AT2G46550.1	21798944
AT2G31040.1	CDY56879	AT2G46550.1	21798944
AT2G31040.1	CDY61731	AT2G46550.1	21798944
AT2G31040.1	CDX73773	AT3G50910.1	21798944
AT2G31040.1	CDX77962	AT3G50910.1	21798944
AT2G31040.1	CDX90677	AT3G50910.1	21798944
AT2G31040.1	CDY28989	AT3G50910.1	21798944
AT2G31040.1	CDY67893	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021688.1-P	Field mustard	plastid	96.15	96.15
CDX97768	Canola	plastid	94.38	94.38
AT2G31040.1	Thale cress	plastid	84.62	81.71
VIT_12s0028g02170.t01	Wine grape	plastid	66.27	66.27
KRH55746	Soybean	plastid	61.54	62.09
Solyc12g010870.1.1	Tomato	plastid	62.72	61.99
PGSC0003DMT400020320	Potato	plastid	61.83	61.65
Solyc07g055050.2.1	Tomato	plastid	61.54	61.54
PGSC0003DMT400052662	Potato	plastid	60.95	60.95
CDX84806	Canola	extracellular, plasma membrane, plastid	20.71	59.83
GSMUA_Achr8P27290_001	Banana	plastid	58.58	57.06
Os01t0673800-01	Rice	mitochondrion	55.62	51.65
TraesCS3B01G305300.1	Wheat	mitochondrion	54.44	50.83
TraesCS3A01G271600.2	Wheat	mitochondrion	54.14	50.55
TraesCS3D01G271200.1	Wheat	mitochondrion	54.14	50.55
Zm00001d011569_P001	Maize	plastid	54.14	50.14
KXG33095	Sorghum	mitochondrion, plastid	54.14	49.73
HORVU1Hr1G066500.1	Barley	plastid	15.38	29.71
CDY23969	Canola	cytosol, endoplasmic reticulum, extracellular	13.61	20.09

Protein Annotations

EnsemblPlants:CDY58985	EnsemblPlantsGene:GSBRNA2T00025427001	GO:A0A078J4L7	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR34118	PANTHER:PTHR34118:SF3	ProteinID:CDY58985	ProteinID:CDY58985.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EDB873	UniProt:A0A078J4L7	MapMan:1.1.9.3.1	:	:

Description

BnaA04g28700DBnaA04g28700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4L7]

Coordinates

chrLK033716:-:32332..34426

Molecular Weight (calculated)

37412.2 Da

IEP (calculated)

9.864

GRAVY (calculated)

-0.325

Length

338 amino acids

Sequence
(BLAST)

001: MAIRTYISAT STTPPIPQDP SRSPLPTKII LPNKKPEKWS TGVAPGEYGG PPTTTKLRKY WGGEKEDPIT SKDLIWNRDF MDQMKKLFDS PDDAPLDPSP
101: SKEESSGFLS FSRVMSLDSM DVDLSKELAS SSSKSVLRDL EASKSEARKQ MSKARVSPKW KLAPTRREQD KWDRATKAAT GGSDVMLRDV RRPRGDPEVL
201: AAESREQYFK LKNKLQLLTV GIGGIGLVSA YISYTPEITL SFGAGLMGSL AYMRMLGNTV DAMADGARGV MKGASGQPRL LVPVVLVMIF NRWNAILVPE
301: YGFMHLELIP MLVGFFTYKI ATFFQAIEEA ITISTQKD

Best Arabidopsis Sequence Match ( AT2G31040.1 )
(BLAST)

001: MAILSYISAT STTPPIPQDQ SPNSRLPTKI ILPNKKPEKW STGVAPGEYG GPPTTTKLRK YWGGEKEDPI TSTDLIWNRD FMDQMKKLFD DPNDSSLDPS
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD

Arabidopsis Description

CGL160Protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82279]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.