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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400009054
PGSC0003DMT400047670
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G31040.1 PGSC0003DMT400084737 AT1G27300.1 21798944
AT2G31040.1 PGSC0003DMT400047670 AT2G46550.1 21798944
AT2G31040.1 PGSC0003DMT400009054 AT3G50910.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g010870.1.1 Tomato plastid 94.69 93.86
PGSC0003DMT400052662 Potato plastid 69.91 70.12
KRH55746 Soybean plastid 65.49 66.27
VIT_12s0028g02170.t01 Wine grape plastid 64.31 64.5
Bra021688.1-P Field mustard plastid 61.95 62.13
CDX97768 Canola plastid 61.65 61.83
CDY58985 Canola plastid 61.65 61.83
AT2G31040.1 Thale cress plastid 62.83 60.86
GSMUA_Achr8P27290_001 Banana plastid 60.47 59.08
Os01t0673800-01 Rice mitochondrion 57.52 53.57
TraesCS3D01G271200.1 Wheat mitochondrion 55.75 52.21
TraesCS3A01G271600.2 Wheat mitochondrion 55.46 51.93
TraesCS3B01G305300.1 Wheat mitochondrion 55.46 51.93
KXG33095 Sorghum mitochondrion, plastid 55.75 51.36
Zm00001d011569_P001 Maize plastid 54.87 50.96
CDX84806 Canola extracellular, plasma membrane, plastid 15.93 46.15
HORVU1Hr1G066500.1 Barley plastid 15.04 29.14
Protein Annotations
EnsemblPlants:PGSC0003DMT400020320EnsemblPlantsGene:PGSC0003DMG400007857EntrezGene:102599925PANTHER:PTHR34118PANTHER:PTHR34118:SF3PGSC:PGSC0003DMG400007857
RefSeq:XP_006350028.1UniParc:UPI0002952772UniProt:M1ADA3MapMan:1.1.9.3.1::
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007857]
Coordinates
chr12:-:1502956..1508027
Molecular Weight (calculated)
37400.2 Da
IEP (calculated)
9.631
GRAVY (calculated)
-0.344
Length
339 amino acids
Sequence
(BLAST)
001: MAVLNCYYLS VTSTATPKSQ ESASNSSPTQ NLPTKVILPK KKPMKWSTGD APGEYGGPPT TTKLRKYWGQ DKDPLTSDDF IWNKEFMGRM KKYVQDPQEK
101: DPVSPAKEES SGFLSLNRVM SLDSMDIDLT KKLITPSKPM LDAEVKESNA SVSASQKWRP APTRREQEKW DRAAKAATGG SEVLLRETRR SQEDPNILAA
201: RSEEQYLKLK DKLQFLTLGI GGVGIVSAYV SYSPEIAASY GAGLLGSLMY MRMLGNSVDS LRTDGPKALI KGAVGQPRLL VPVVLVMIYN RWNGILSAEY
301: GLMHLELIPM LVGFFTYKIA TFAQAIEEAV AIVGKKTET
Best Arabidopsis Sequence Match ( AT2G31040.1 )
(BLAST)
001: MAILSYISAT STTPPIPQDQ SPNSRLPTKI ILPNKKPEKW STGVAPGEYG GPPTTTKLRK YWGGEKEDPI TSTDLIWNRD FMDQMKKLFD DPNDSSLDPS
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD
Arabidopsis Description
CGL160Protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82279]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.