Factsheet for VIT_12s0028g02170.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_04s0023g02110.t01
VIT_15s0046g00260.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31040.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT2G31040.1	VIT_15s0046g00260.t01	AT2G46550.1	21798944
AT2G31040.1	VIT_04s0023g02110.t01	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55746	Soybean	plastid	70.12	70.75
CDY58985	Canola	plastid	66.27	66.27
CDX97768	Canola	plastid	65.98	65.98
Bra021688.1-P	Field mustard	plastid	65.68	65.68
AT2G31040.1	Thale cress	plastid	67.46	65.14
PGSC0003DMT400052662	Potato	plastid	64.79	64.79
Solyc07g055050.2.1	Tomato	plastid	64.5	64.5
Solyc12g010870.1.1	Tomato	plastid	65.09	64.33
PGSC0003DMT400020320	Potato	plastid	64.5	64.31
GSMUA_Achr8P27290_001	Banana	plastid	62.43	60.81
Os01t0673800-01	Rice	mitochondrion	61.54	57.14
Zm00001d011569_P001	Maize	plastid	60.65	56.16
TraesCS3B01G305300.1	Wheat	mitochondrion	58.88	54.97
TraesCS3D01G271200.1	Wheat	mitochondrion	58.88	54.97
KXG33095	Sorghum	mitochondrion, plastid	59.76	54.89
TraesCS3A01G271600.2	Wheat	mitochondrion	58.58	54.7
CDX84806	Canola	extracellular, plasma membrane, plastid	16.27	47.01
HORVU1Hr1G066500.1	Barley	plastid	17.46	33.71

Protein Annotations

MapMan:1.1.9.3.1	EntrezGene:100243760	wikigene:100243760	EMBL:AM426708	ProteinID:CAN77926	ProteinID:CAN77926.1
ProteinID:CBI21985	ProteinID:CBI21985.3	UniProt:E0CTR9	EMBL:FN595235	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100243760	wikigene:LOC100243760	PANTHER:PTHR34118	PANTHER:PTHR34118:SF3	TIGR:TC56515
UniParc:UPI00015C976E	ArrayExpress:VIT_12s0028g02170	EnsemblPlantsGene:VIT_12s0028g02170	EnsemblPlants:VIT_12s0028g02170.t01	unigene:Vvi.4429	RefSeq:XP_002280622
RefSeq:XP_002280622.1	RefSeq:XP_019079133.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:2958962..2965408

Molecular Weight (calculated)

37434.2 Da

IEP (calculated)

9.778

GRAVY (calculated)

-0.287

Length

338 amino acids

Sequence
(BLAST)

001: MVVLSYFSVN CATTPISQDS STPTSPNPRE TKVILPKKKP QKWSTGVAPG DYGGPPTTSK LRKYWGGEED PLTSDDFIWN KDFMGRMKKL IQDPDSSSLQ
101: PPPDKEESSG FLSISRVMSL DSLEVDLSKE LSAPSRTVLE QQVEAPPRRD GNTSRRWKLV PTRREQEKWD RATKAATGGS DVMFREIRKP RGDPKVLAAE
201: SREQYFKLKK KLQIFTLGLG GVGLVSAYVS YSPEIAASFG AGFIGSLVYI RMLGSSVDSM ADGAKGLMKG AIAQPRLLVP VALVMIYNRW NEIVVPEFGF
301: MHLELIPMLV GFFTYKVATF VQAIEEALTI VGKDTQVR

Best Arabidopsis Sequence Match ( AT2G31040.1 )
(BLAST)

001: MAILSYISAT STTPPIPQDQ SPNSRLPTKI ILPNKKPEKW STGVAPGEYG GPPTTTKLRK YWGGEKEDPI TSTDLIWNRD FMDQMKKLFD DPNDSSLDPS
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD

Arabidopsis Description

CGL160Protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82279]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.