CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71815
CDX74305
CDX84893
CDX90721
CDX91942
CDY00016
CDY05057
CDY41170
CDY45796
CDY56997
CDY58906
CDY59823

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	CDY00016	AT1G54770.1	21798944
AT2G46550.1	CDY59823	AT1G54770.1	21798944
AT2G46550.1	CDX74305	AT3G01550.1	21798944
AT2G46550.1	CDX91942	AT3G01550.1	21798944
AT2G46550.1	CDX71815	AT3G60360.1	21798944
AT2G46550.1	CDY41170	AT3G60360.1	21798944
AT2G46550.1	CDY56997	AT3G60360.1	21798944
AT2G46550.1	CDY58906	AT3G60360.1	21798944
AT2G46550.1	CDX90721	AT4G09460.1	21798944
AT2G46550.1	CDY05057	AT4G09460.1	21798944
AT2G46550.1	CDX84893	AT5G51010.1	21798944
AT2G46550.1	CDY45796	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004527.1-P	Field mustard	nucleus, plastid	100.0	100.0
CDY56879	Canola	nucleus	87.15	86.92
CDY27317	Canola	nucleus	52.96	63.38
CDY61731	Canola	nucleus	50.9	63.26
CDX85174	Canola	nucleus	31.88	60.78
CDX99425	Canola	nucleus	9.51	58.73
CDY68438	Canola	nucleus	9.51	58.73
AT2G46550.1	Thale cress	nucleus, plastid	57.58	56.42
CDY15190	Canola	mitochondrion	29.56	36.98
KRH68927	Soybean	nucleus	38.82	35.45
CDX90019	Canola	mitochondrion	30.33	35.22
KRG97204	Soybean	nucleus	38.56	35.21
CDY38000	Canola	mitochondrion	28.28	32.35
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	38.05	30.96
KRH47890	Soybean	cytosol, mitochondrion	34.7	30.41
KRH06447	Soybean	cytosol, mitochondrion	34.7	30.34
Os09t0363500-01	Rice	mitochondrion	31.36	26.35
Os08t0400300-01	Rice	nucleus	32.13	25.99
Zm00001d032283_P004	Maize	mitochondrion	31.62	25.68
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	30.85	25.59
Zm00001d020233_P001	Maize	mitochondrion	30.59	25.54
Zm00001d005653_P001	Maize	nucleus	29.56	24.68
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	28.79	24.19
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	29.05	24.15
EES13800	Sorghum	mitochondrion	29.56	24.01
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	28.53	23.82
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	29.05	23.64
Solyc03g083000.2.1	Tomato	nucleus	23.65	22.66
PGSC0003DMT400047670	Potato	nucleus	22.62	21.62
GSMUA_AchrUn_...	Banana	cytosol	7.97	13.19

Protein Annotations

EnsemblPlants:CDX80028	EnsemblPlantsGene:GSBRNA2T00132907001	GO:A0A078CY65	ncoils:Coil	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2
ProteinID:CDX80028	ProteinID:CDX80028.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00025473C9	MapMan:35.2

Description

BnaA05g01280D

Coordinates

chrLK031819:-:1385090..1387028

Molecular Weight (calculated)

44022.7 Da

IEP (calculated)

9.089

GRAVY (calculated)

-0.818

Length

389 amino acids

Sequence
(BLAST)

001: MMAAGEARAV WQRTVNRYFV QEDAKRAPKL TTSSCQSSSS TVSSKQVEDS GSSRPVVDPH NQSSICPSFM PRHPNPNFPH LSPNNTSLWG HHHHIQQDHK
101: EPVNTPLEAE VDISEKKPEL GAKSFKSESF QEFIELMETR ESYVSFGKDE SSSENKLLNE LPFDPTSPWN PLSSEKAAPW WRTTDKDELA SLVAQRSLDF
201: VENCDLPTPQ KMNRSYYGSP RSFDSDHSFS NRTIHERVTN RGNSFKNRTE EASSESGLSK SELLEALRRS QTRAREAENM AKEACAEKEH LVKLLLKQAS
301: ELFGYKQLLQ LLQLESLYHQ IKSKKIEDNK EPPPVSIPWS NTKGRKPGRK RRSKRSKPNG FVGLALGMSL VGAGLLLGWT VGWMQMFSF

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.