Factsheet for Bra004527.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000680.1-P
Bra001003.1-P
Bra007528.1-P
Bra014494.1-P
Bra022748.1-P
Bra036122.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	Bra036122.1-P	AT1G54770.1	21798944
AT2G46550.1	Bra001003.1-P	AT3G01550.1	21798944
AT2G46550.1	Bra007528.1-P	AT3G60360.1	21798944
AT2G46550.1	Bra014494.1-P	AT3G60360.1	21798944
AT2G46550.1	Bra000680.1-P	AT4G09460.1	21798944
AT2G46550.1	Bra022748.1-P	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80028	Canola	nucleus, plastid	100.0	100.0
Bra039276.1-P	Field mustard	nucleus	51.16	58.7
AT2G46550.1	Thale cress	nucleus, plastid	57.58	56.42
Bra039275.1-P	Field mustard	nucleus	23.91	51.96
KRH68927	Soybean	nucleus	38.82	35.45
KRG97204	Soybean	nucleus	38.56	35.21
Bra032629.1-P	Field mustard	mitochondrion	29.05	33.43
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	38.05	30.96
KRH47890	Soybean	cytosol, mitochondrion	34.7	30.41
KRH06447	Soybean	cytosol, mitochondrion	34.7	30.34
Bra033275.1-P	Field mustard	mitochondrion	23.65	30.16
Os09t0363500-01	Rice	mitochondrion	31.36	26.35
Os08t0400300-01	Rice	nucleus	32.13	25.99
Zm00001d032283_P004	Maize	mitochondrion	31.62	25.68
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	30.85	25.59
Zm00001d020233_P001	Maize	mitochondrion	30.59	25.54
Zm00001d005653_P001	Maize	nucleus	29.56	24.68
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	28.79	24.19
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	29.05	24.15
EES13800	Sorghum	mitochondrion	29.56	24.01
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	28.53	23.82
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	29.05	23.64
Solyc03g083000.2.1	Tomato	nucleus	23.65	22.66
PGSC0003DMT400047670	Potato	nucleus	22.62	21.62
GSMUA_AchrUn_...	Banana	cytosol	7.97	13.19

Protein Annotations

EnsemblPlants:Bra004527.1	EnsemblPlants:Bra004527.1-P	EnsemblPlantsGene:Bra004527	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	SEG:seg	TMHMM:TMhelix	UniParc:UPI00025473C9
UniProt:M4CJZ3	MapMan:35.2	:	:	:	:

Description

AT2G46550 (E=7e-121) | unknown protein

Coordinates

chrA05:+:646088..647257

Molecular Weight (calculated)

44022.7 Da

IEP (calculated)

9.089

GRAVY (calculated)

-0.818

Length

389 amino acids

Sequence
(BLAST)

001: MMAAGEARAV WQRTVNRYFV QEDAKRAPKL TTSSCQSSSS TVSSKQVEDS GSSRPVVDPH NQSSICPSFM PRHPNPNFPH LSPNNTSLWG HHHHIQQDHK
101: EPVNTPLEAE VDISEKKPEL GAKSFKSESF QEFIELMETR ESYVSFGKDE SSSENKLLNE LPFDPTSPWN PLSSEKAAPW WRTTDKDELA SLVAQRSLDF
201: VENCDLPTPQ KMNRSYYGSP RSFDSDHSFS NRTIHERVTN RGNSFKNRTE EASSESGLSK SELLEALRRS QTRAREAENM AKEACAEKEH LVKLLLKQAS
301: ELFGYKQLLQ LLQLESLYHQ IKSKKIEDNK EPPPVSIPWS NTKGRKPGRK RRSKRSKPNG FVGLALGMSL VGAGLLLGWT VGWMQMFSF

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.