Factsheet for Solyc03g083000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086650.2.1
Solyc03g118130.2.1
Solyc05g053220.2.1
Solyc06g065100.2.1
Solyc10g079430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	Solyc05g053220.2.1	AT1G54770.1	21798944
AT2G46550.1	Solyc02g086650.2.1	AT3G01550.1	21798944
AT2G46550.1	Solyc10g079430.1.1	AT3G60360.1	21798944
AT2G46550.1	Solyc06g065100.2.1	AT4G09460.1	21798944
AT2G46550.1	Solyc03g118130.2.1	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047670	Potato	nucleus	92.36	92.14
CDY68438	Canola	nucleus	7.14	46.03
CDX99425	Canola	nucleus	7.14	46.03
AT1G01240.3	Thale cress	mitochondrion	24.38	29.91
CDY27317	Canola	nucleus	23.4	29.23
CDY61731	Canola	nucleus	22.17	28.75
CDY15190	Canola	mitochondrion	21.92	28.62
Bra039276.1-P	Field mustard	nucleus	22.91	27.43
CDX90019	Canola	mitochondrion	22.41	27.16
Bra032629.1-P	Field mustard	mitochondrion	22.41	26.92
CDY38000	Canola	mitochondrion	21.92	26.18
AT2G46550.1	Thale cress	nucleus, plastid	23.65	24.18
CDY56879	Canola	nucleus	23.15	24.1
CDX80028	Canola	nucleus, plastid	22.66	23.65
Bra004527.1-P	Field mustard	nucleus, plastid	22.66	23.65
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	25.86	22.68
Bra033275.1-P	Field mustard	mitochondrion	16.75	22.3
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	25.62	22.17
Zm00001d020233_P001	Maize	mitochondrion	25.37	22.1
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	25.37	22.01
Zm00001d005653_P001	Maize	nucleus	25.12	21.89
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	25.62	21.76
Solyc01g096100.2.1	Tomato	nucleus	25.37	21.73
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	24.88	21.67
Os09t0363500-01	Rice	mitochondrion	24.63	21.6
CDX85174	Canola	nucleus	10.84	21.57
Zm00001d032283_P004	Maize	mitochondrion	24.14	20.46
Os08t0400300-01	Rice	nucleus	23.65	19.96
EES13800	Sorghum	mitochondrion	23.15	19.62
Bra039275.1-P	Field mustard	nucleus	6.65	15.08

Protein Annotations

EnsemblPlants:Solyc03g083000.2.1	EnsemblPlantsGene:Solyc03g083000.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33868
PANTHER:PTHR33868:SF8	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002768921	UniProt:K4BI76	MapMan:35.2

Description

No Description!

Coordinates

chr3:+:52846284..52848881

Molecular Weight (calculated)

45839.2 Da

IEP (calculated)

8.048

GRAVY (calculated)

-0.651

Length

406 amino acids

Sequence
(BLAST)

001: MSSAQIRFNH NSRNSKRGSQ DLLGGKDFEL HECEKDNSHE PLSMLESELK VLSAESVHVL KLCGGNQLIE EFYSQTYCDD VEKLDHHLKG YNPSAYSYKD
101: SQLHMLQNVV GDGSQRKPIN TDSGGFMELD YYMDLDPGQT KKACSELDSE WIGVQKAQPW WRTADKELAA SGSPKSSECI TYSEHSWREP LRSESYNCSN
201: QVSMIEKESL VTPDYCPRQH PSQSQQKILC VGKGCLSRRS GQPVSGDDNL SIANVLSSET QPGSSDLSKT QLLEALCYSQ TRAREAEQLA QQAYNEKEHV
301: IKLLFRQASQ LFAYRQWLQI LQLEALVLQL RNKDEQDSIN YSNSFPVIPC KGRKLKKFRY NKPTKKKTRK GKFKINKSAV AFALGLSLAG AGLLLGWTMG
401: WLFPAL

Best Arabidopsis Sequence Match ( AT2G46550.2 )
(BLAST)

001: METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI
101: KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS
201: IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.