Factsheet for Solyc06g065100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080427	Potato	nucleus	95.7	93.68
GSMUA_AchrUn_...	Banana	nucleus	41.94	78.52
GSMUA_Achr2P20600_001	Banana	nucleus	44.44	70.86
Solyc12g096200.1.1	Tomato	nucleus	29.03	64.8
GSMUA_Achr6P07260_001	Banana	mitochondrion	45.52	63.82
GSMUA_Achr3P22200_001	Banana	nucleus	48.75	62.67
GSMUA_Achr8P32480_001	Banana	nucleus	44.09	61.5
GSMUA_Achr5P26000_001	Banana	nucleus	45.88	60.95
GSMUA_Achr10P...	Banana	nucleus	46.24	59.45
EES16743	Sorghum	nucleus	45.52	59.07
TraesCS1A01G268800.1	Wheat	nucleus	51.97	58.7
TraesCS1B01G279400.1	Wheat	nucleus	51.25	57.89
TraesCS1D01G268900.1	Wheat	nucleus	51.25	57.89
HORVU1Hr1G074260.1	Barley	nucleus	51.61	57.37
Os05t0429900-01	Rice	nucleus	53.41	57.31
GSMUA_Achr6P25420_001	Banana	nucleus	48.03	56.54
Zm00001d041853_P001	Maize	nucleus	45.16	55.75
Zm00001d012255_P001	Maize	nucleus	49.82	55.38
GSMUA_Achr5P17010_001	Banana	nucleus	47.67	55.19
Solyc01g111500.2.1	Tomato	nucleus	49.82	55.16
Zm00001d042665_P001	Maize	nucleus	51.25	54.58
CDX90721	Canola	nucleus	43.73	54.46
Bra000680.1-P	Field mustard	nucleus	43.73	54.46
AT1G35515.1	Thale cress	nucleus	41.22	54.25
CDY05057	Canola	nucleus	44.09	54.19
TraesCS5A01G111300.1	Wheat	nucleus	47.31	54.1
Solyc05g008250.1.1	Tomato	nucleus	34.41	53.93
Zm00001d038338_P001	Maize	nucleus	49.82	53.88
Solyc10g055410.1.1	Tomato	nucleus	52.33	53.48
KXG22070	Sorghum	nucleus	49.82	53.05
AT4G09460.1	Thale cress	nucleus	44.8	52.97
EES01839	Sorghum	nucleus	50.18	52.04
HORVU5Hr1G036900.1	Barley	nucleus	48.39	51.14
Zm00001d010201_P001	Maize	nucleus	45.52	51.0
TraesCS3A01G384400.1	Wheat	nucleus	48.75	50.94
GSMUA_Achr9P08600_001	Banana	nucleus	49.46	50.74
TraesCS3B01G416400.1	Wheat	nucleus	48.39	50.56
VIT_07s0130g00040.t01	Wine grape	nucleus	52.33	50.34
TraesCS3D01G377300.1	Wheat	nucleus	48.75	50.18
HORVU3Hr1G082210.1	Barley	nucleus	48.39	50.0
Os01t0874300-01	Rice	extracellular, nucleus	51.25	49.83
Zm00001d004744_P001	Maize	nucleus	48.75	49.45
TraesCS5B01G119300.1	Wheat	nucleus	48.03	49.26
KRH54016	Soybean	nucleus	51.97	48.17
KRH63931	Soybean	nucleus	51.97	48.01
GSMUA_Achr6P12930_001	Banana	nucleus	49.1	47.9
Os11t0180900-00	Rice	nucleus	50.54	47.8
TraesCS4A01G217800.1	Wheat	nucleus	49.1	47.57
TraesCS4D01G092900.1	Wheat	nucleus	49.1	47.4
Zm00001d053060_P001	Maize	nucleus	48.75	47.22
GSMUA_Achr5P01180_001	Banana	nucleus	43.73	46.92
GSMUA_Achr10P...	Banana	nucleus	47.31	46.48
OQU78830	Sorghum	nucleus	44.8	44.33
OQU83016	Sorghum	nucleus	49.46	43.81
TraesCS5D01G128200.2	Wheat	nucleus	48.03	43.79
HORVU4Hr1G018360.2	Barley	nucleus	49.82	38.08
TraesCS4B01G096500.1	Wheat	nucleus, plastid	49.1	35.96
Solyc07g008010.2.1	Tomato	nucleus	24.73	32.7
Solyc08g082890.2.1	Tomato	nucleus	32.62	32.16
Solyc08g005870.1.1	Tomato	nucleus	31.9	31.45
Solyc08g008480.2.1	Tomato	nucleus	35.13	30.72
Solyc01g005660.1.1	Tomato	nucleus, plastid	33.33	30.19
Solyc12g049350.1.1	Tomato	nucleus	31.18	29.69
Solyc06g009710.2.1	Tomato	nucleus	30.11	28.28
Solyc01g079620.2.1	Tomato	nucleus	30.47	25.15
Solyc12g049300.1.1	Tomato	nucleus	30.82	24.43

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4C7D9	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF741
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc06g065100.2	EnsemblPlants:Solyc06g065100.2.1	UniParc:UPI00027672A7
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:40606766..40608816

Molecular Weight (calculated)

31218.2 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.566

Length

279 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDQRLINYIR AHGEGCWRSL PKAAGLSRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS VIAGRLPGRT
101: DNEIKNYWNT HIKRKLISRG IDPQTHRPLN NNATNSHTTT NITTAVTTKN INLDFTNVDQ KQPNIMIATS SSYDETKCNS GTTEETKPLE IIIPKIPSQV
201: MINLELSIGL PLHTDHISSP ESTASYNFLT TVAPPPTAAV PAAEMMAKTV CLCWQIGYHG GGGQWCGKCK NTNGFYRYC

Best Arabidopsis Sequence Match ( AT4G38620.1 )
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIRRKLINRG IDPTSHRPIQ ESSASQDSKP TQLEPVTSNT INISFTSAPK VETFHESISF PGKSEKISML TFKEEKDECP VQEKFPDLNL
201: ELRISLPDDV DRLQGHGKST TPRCFKCSLG MINGMECRCG RMRCDVVGGS SKGSDMSNGF DFLGLAKKET TSLLGFRSLE MK

Arabidopsis Description

MYB4Transcription repressor MYB4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.