Factsheet for HORVU5Hr1G036900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G111300.1	Wheat	nucleus	82.95	89.75
TraesCS5B01G119300.1	Wheat	nucleus	90.91	88.24
GSMUA_AchrUn_...	Banana	nucleus	45.83	81.21
TraesCS5D01G128200.2	Wheat	nucleus	91.29	78.76
GSMUA_Achr2P20600_001	Banana	nucleus	50.38	76.0
GSMUA_Achr5P26000_001	Banana	nucleus	50.76	63.81
GSMUA_Achr6P07260_001	Banana	mitochondrion	46.97	62.31
GSMUA_Achr3P22200_001	Banana	nucleus	50.0	60.83
GSMUA_Achr8P32480_001	Banana	nucleus	45.83	60.5
GSMUA_Achr10P...	Banana	nucleus	48.48	58.99
GSMUA_Achr6P25420_001	Banana	nucleus	50.76	56.54
HORVU7Hr1G057410.1	Barley	nucleus	49.62	55.04
HORVU1Hr1G074260.1	Barley	nucleus	51.14	53.78
CDX90721	Canola	nucleus	45.08	53.12
Bra000680.1-P	Field mustard	nucleus	45.08	53.12
GSMUA_Achr5P17010_001	Banana	nucleus	48.11	52.7
AT1G35515.1	Thale cress	nucleus	42.05	52.36
CDY05057	Canola	nucleus	44.7	51.98
HORVU5Hr1G083910.2	Barley	nucleus	51.89	50.93
HORVU3Hr1G082210.1	Barley	nucleus	51.89	50.74
AT4G09460.1	Thale cress	nucleus	45.08	50.42
GSMUA_Achr9P08600_001	Banana	nucleus	51.52	50.0
Solyc06g065100.2.1	Tomato	nucleus	51.14	48.39
GSMUA_Achr6P12930_001	Banana	nucleus	50.76	46.85
PGSC0003DMT400080427	Potato	nucleus	50.38	46.67
VIT_07s0130g00040.t01	Wine grape	nucleus	50.76	46.21
KRH54016	Soybean	nucleus	50.38	44.19
KRH63931	Soybean	nucleus	50.0	43.71
HORVU4Hr1G018360.2	Barley	nucleus	54.92	39.73
HORVU3Hr1G100500.1	Barley	nucleus	33.33	34.51
HORVU4Hr1G063760.1	Barley	nucleus	28.03	32.03
HORVU7Hr1G034630.1	Barley	nucleus	31.06	30.6
HORVU0Hr1G006810.2	Barley	nucleus	31.06	30.6
HORVU4Hr1G082610.1	Barley	nucleus	30.3	30.53
HORVU4Hr1G054420.3	Barley	nucleus	32.95	25.59

Protein Annotations

EnsemblPlants:HORVU5Hr1G036900.1	EnsemblPlantsGene:HORVU5Hr1G036900	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF617	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002950141	UniProt:M0XXI0	MapMan:15.5.2.1	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:264257920..264259443

Molecular Weight (calculated)

28178.4 Da

IEP (calculated)

8.640

GRAVY (calculated)

-0.491

Length

264 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDQRLIAHIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TDEEDELIIK LHEFLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HVKRKLLARG VDPQTHRPLN AGAAAVQGMN TPSSPAVASG ASHHQLAGGS SCSPDGSGHS SDADESGVSL PPSLAGHLGG AIIDLNLSIS
201: PPCQPPSPPL GREEAGMLRT GYSERQRLCL CLNRLGLHGS EGCSCVGSSS SSSLHPASSG VLRT

Best Arabidopsis Sequence Match ( AT1G22640.1 )
(BLAST)

001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH

Arabidopsis Description

MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.