Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22640.1 | KRH10835 | AT4G21670.1 | 18541146 |
| AT1G22640.1 | KRH20483 | AT4G21670.1 | 18541146 |
| AT1G22640.1 | KRH21480 | AT4G21670.1 | 18541146 |
| AT1G22640.1 | KRH50009 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63931 | Soybean | nucleus | 92.36 | 92.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.2 | 79.19 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 42.19 | 72.57 |
| KRH60702 | Soybean | nucleus | 45.51 | 65.24 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 46.51 | 64.52 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 42.19 | 63.82 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 44.19 | 63.33 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 60.13 | 62.41 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 40.2 | 60.5 |
| GSMUA_Achr10P... | Banana | nucleus | 43.52 | 60.37 |
| EES16743 | Sorghum | nucleus | 42.86 | 60.0 |
| KRH51400 | Soybean | nucleus | 46.84 | 60.0 |
| KRG94424 | Soybean | nucleus | 18.27 | 59.78 |
| KRH29280 | Soybean | nucleus | 48.84 | 59.76 |
| TraesCS1A01G268800.1 | Wheat | nucleus | 48.17 | 58.7 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 46.18 | 58.65 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 46.84 | 58.51 |
| TraesCS1D01G268900.1 | Wheat | nucleus | 47.84 | 58.3 |
| CDX91687 | Canola | nucleus | 43.52 | 58.22 |
| HORVU1Hr1G074260.1 | Barley | nucleus | 48.17 | 57.77 |
| KRH24301 | Soybean | nucleus | 48.51 | 57.71 |
| TraesCS1B01G279400.1 | Wheat | nucleus | 47.18 | 57.49 |
| Zm00001d012255_P001 | Maize | nucleus | 47.51 | 56.97 |
| KRH41018 | Soybean | nucleus | 41.2 | 56.88 |
| Zm00001d041853_P001 | Maize | nucleus | 42.19 | 56.19 |
| Os05t0429900-01 | Rice | nucleus | 47.84 | 55.38 |
| Zm00001d038338_P001 | Maize | nucleus | 47.18 | 55.04 |
| KXG22070 | Sorghum | nucleus | 47.18 | 54.2 |
| TraesCS3A01G384400.1 | Wheat | nucleus | 47.84 | 53.93 |
| EES01839 | Sorghum | nucleus | 48.17 | 53.9 |
| Zm00001d042665_P001 | Maize | nucleus | 46.84 | 53.82 |
| HORVU3Hr1G082210.1 | Barley | nucleus | 48.17 | 53.7 |
| TraesCS3B01G416400.1 | Wheat | nucleus | 47.51 | 53.56 |
| AT1G22640.1 | Thale cress | nucleus | 45.51 | 53.31 |
| TraesCS5A01G111300.1 | Wheat | nucleus | 43.19 | 53.28 |
| TraesCS3D01G377300.1 | Wheat | nucleus | 47.84 | 53.14 |
| Zm00001d010201_P001 | Maize | nucleus | 43.52 | 52.61 |
| AT2G16720.1 | Thale cress | nucleus | 46.51 | 52.04 |
| Bra024526.1-P | Field mustard | nucleus | 46.51 | 52.04 |
| CDY04798 | Canola | nucleus | 46.51 | 52.04 |
| CDY21378 | Canola | nucleus | 46.51 | 52.04 |
| Solyc06g065100.2.1 | Tomato | nucleus | 48.17 | 51.97 |
| PGSC0003DMT400080427 | Potato | nucleus | 49.17 | 51.93 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 46.51 | 51.47 |
| CDY25747 | Canola | nucleus | 44.85 | 51.14 |
| HORVU5Hr1G036900.1 | Barley | nucleus | 44.19 | 50.38 |
| Os01t0874300-01 | Rice | extracellular, nucleus | 47.51 | 49.83 |
| Zm00001d004744_P001 | Maize | nucleus | 45.51 | 49.82 |
| Bra012337.1-P | Field mustard | nucleus | 45.18 | 49.28 |
| KRH15114 | Soybean | nucleus | 30.56 | 49.2 |
| AT4G34990.1 | Thale cress | nucleus | 44.19 | 48.54 |
| CDY12520 | Canola | nucleus | 43.85 | 48.53 |
| TraesCS5B01G119300.1 | Wheat | nucleus | 43.85 | 48.53 |
| Os11t0180900-00 | Rice | nucleus | 47.51 | 48.47 |
| Bra017685.1-P | Field mustard | nucleus | 43.52 | 48.34 |
| CDX72510 | Canola | nucleus | 43.52 | 48.34 |
| CDY40652 | Canola | nucleus | 43.52 | 48.34 |
| TraesCS4A01G217800.1 | Wheat | nucleus | 46.18 | 48.26 |
| TraesCS4D01G092900.1 | Wheat | nucleus | 46.18 | 48.1 |
| GSMUA_Achr10P... | Banana | nucleus | 45.18 | 47.89 |
| KRG89277 | Soybean | nucleus | 35.22 | 47.53 |
| CDY02243 | Canola | nucleus | 45.18 | 47.39 |
| CDY72116 | Canola | nucleus | 45.18 | 47.39 |
| Bra013055.1-P | Field mustard | nucleus | 45.18 | 47.22 |
| Zm00001d053060_P001 | Maize | nucleus | 45.18 | 47.22 |
| CDX69102 | Canola | nucleus | 44.85 | 47.2 |
| Bra011576.1-P | Field mustard | nucleus | 44.85 | 47.04 |
| CDX75478 | Canola | nucleus | 44.85 | 47.04 |
| KRH50345 | Soybean | nucleus | 35.88 | 46.75 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 44.19 | 46.5 |
| KRH73023 | Soybean | nucleus | 33.89 | 46.36 |
| GSMUA_Achr5P01180_001 | Banana | nucleus | 39.87 | 46.15 |
| OQU78830 | Sorghum | nucleus | 42.52 | 45.39 |
| OQU83016 | Sorghum | nucleus | 46.18 | 44.13 |
| TraesCS5D01G128200.2 | Wheat | nucleus | 43.85 | 43.14 |
| KRH77336 | Soybean | nucleus | 24.92 | 41.21 |
| KRH28144 | Soybean | nucleus | 24.25 | 39.89 |
| KRH12516 | Soybean | nucleus | 23.92 | 39.78 |
| HORVU4Hr1G018360.2 | Barley | nucleus | 46.84 | 38.63 |
| KRG97208 | Soybean | nucleus | 35.88 | 38.43 |
| TraesCS4B01G096500.1 | Wheat | nucleus, plastid | 47.18 | 37.27 |
| KRH04166 | Soybean | nucleus | 24.25 | 37.06 |
| KRH47594 | Soybean | nucleus | 33.55 | 36.86 |
| KRH68929 | Soybean | nucleus | 29.9 | 36.73 |
| KRH06177 | Soybean | nucleus | 33.55 | 35.44 |
| KRH47884 | Soybean | nucleus | 33.55 | 34.83 |
| KRH06443 | Soybean | nucleus | 32.89 | 33.79 |
| KRH47591 | Soybean | nucleus | 29.24 | 33.21 |
| KRH06175 | Soybean | nucleus | 29.24 | 32.71 |
| KRH19274 | Soybean | nucleus | 30.9 | 30.59 |
| KRH02634 | Soybean | nucleus | 30.56 | 29.97 |
| KRG91990 | Soybean | nucleus | 27.24 | 29.93 |
| KRH34790 | Soybean | nucleus | 27.24 | 29.93 |
| KRG91991 | Soybean | nucleus | 26.58 | 29.41 |
| KRH34791 | Soybean | nucleus | 25.91 | 28.57 |
| KRH11988 | Soybean | nucleus | 31.23 | 28.48 |
| KRH17997 | Soybean | nucleus, plastid | 33.22 | 28.25 |
| KRH50769 | Soybean | nucleus | 31.23 | 27.89 |
| KRH37017 | Soybean | nucleus | 30.56 | 27.54 |
| KRH16413 | Soybean | nucleus | 32.23 | 26.87 |
| KRH02323 | Soybean | nucleus | 30.23 | 26.0 |
| KRG96503 | Soybean | nucleus | 30.56 | 25.99 |
| KRH69237 | Soybean | nucleus | 31.23 | 25.34 |
| KRH31822 | Soybean | nucleus | 28.57 | 25.15 |
| KRH68241 | Soybean | nucleus | 29.57 | 24.79 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EMBL:ACUP02003491 | EnsemblPlantsGene:GLYMA_06G160500 | GO:GO:0000981 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 |
| InterPro:Homeobox-like_sf | UniProt:I1KBT0 | InterPro:IPR017930 | EnsemblPlants:KRH54016 | ProteinID:KRH54016 | ProteinID:KRH54016.1 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF651 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001BA8FD1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr6:+:13247788..13249446
Molecular Weight (calculated)
33760.8 Da
IEP (calculated)
9.049
GRAVY (calculated)
-0.764
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKE HTNKGAWTKE EDERLINYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TEEEDELIIN LHSLLGNKWS LIAARLPGRT
101: DNEIKNYWNT HIKRKLYSRG IDPQTHRPLN AASATPATTV TATAVPSSNS KKKIKNNNNN NNGFQLVNNS AYANTKIGTD MIAAEDSNSS SGVTTEESFP
201: HHQLNLDLSI GLPSQPQVSS SLNPEKLKPE PQEHDDQKPQ VLYQLYGKNI TGQQGVCLCY NLGLQSNQAC YCKTMGTSTT TVTTTTATDR NLYRFYRPMN
301: I
101: DNEIKNYWNT HIKRKLYSRG IDPQTHRPLN AASATPATTV TATAVPSSNS KKKIKNNNNN NNGFQLVNNS AYANTKIGTD MIAAEDSNSS SGVTTEESFP
201: HHQLNLDLSI GLPSQPQVSS SLNPEKLKPE PQEHDDQKPQ VLYQLYGKNI TGQQGVCLCY NLGLQSNQAC YCKTMGTSTT TVTTTTATDR NLYRFYRPMN
301: I
001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
Arabidopsis Description
MYB6Transcription repressor MYB6 [Source:UniProtKB/Swiss-Prot;Acc:Q38851]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.