Factsheet for Bra024526.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013546.1-P
Bra020905.1-P
Bra038764.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22640.1	Bra013546.1-P	AT4G21670.1	18541146
AT1G22640.1	Bra020905.1-P	AT4G21670.1	18541146
AT1G22640.1	Bra038764.1-P	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21378	Canola	nucleus	100.0	100.0
CDY04798	Canola	nucleus	97.03	97.03
Bra012337.1-P	Field mustard	nucleus	86.62	84.42
AT1G22640.1	Thale cress	nucleus	77.7	81.32
Bra000680.1-P	Field mustard	nucleus	47.58	57.14
Bra010736.1-P	Field mustard	nucleus	49.81	47.35
VIT_07s0130g00040.t01	Wine grape	nucleus	50.93	47.24
Bra017685.1-P	Field mustard	nucleus	47.58	47.23
KRH54016	Soybean	nucleus	52.04	46.51
Bra033572.1-P	Field mustard	nucleus	50.19	45.92
Bra011576.1-P	Field mustard	nucleus	48.7	45.64
KRH63931	Soybean	nucleus	50.56	45.03
Bra013055.1-P	Field mustard	nucleus	47.58	44.44
Bra008740.1-P	Field mustard	nucleus	29.0	39.59
Bra023486.1-P	Field mustard	nucleus	27.51	39.36
Bra022602.1-P	Field mustard	nucleus	27.88	37.88
Bra027423.1-P	Field mustard	nucleus	34.57	36.47
Bra039395.1-P	Field mustard	nucleus	33.46	35.86
Bra029113.1-P	Field mustard	nucleus	25.28	34.17
Bra035532.1-P	Field mustard	nucleus	32.34	33.46
Bra025311.1-P	Field mustard	nucleus	25.65	30.67
Bra039065.1-P	Field mustard	nucleus	21.56	29.15
Bra025589.1-P	Field mustard	nucleus	27.51	29.02
Bra037419.1-P	Field mustard	nucleus	33.46	26.24
Bra036145.1-P	Field mustard	nucleus	33.83	26.22
Bra000453.1-P	Field mustard	nucleus	34.94	25.0
Bra004456.1-P	Field mustard	nucleus	26.02	19.18

Protein Annotations

EnsemblPlants:Bra024526.1	EnsemblPlants:Bra024526.1-P	EnsemblPlantsGene:Bra024526	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF949	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002542A8A	UniProt:M4E6X1	MapMan:15.5.2.1	:	:

Description

AT1G22640 (E=2e-099) ATMYB3, MYB3 | MYB3 (MYB DOMAIN PROTEIN 3); DNA binding / transcription factor

Coordinates

chrA09:-:24621606..24622608

Molecular Weight (calculated)

30546.0 Da

IEP (calculated)

8.162

GRAVY (calculated)

-0.794

Length

269 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLAGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNTHRPIN ESTIPPSKTT TPSLLHDESV QFDLAKPDQQ QTVKPEPTVL YREEGDNNNN NCTSSGTTSD DDCVLNLELS
201: VGPATTRSYR YESTRKTNLD SVESTGRWGS ELFGAQAGVC LCCRIGFHNE SCRNCRVSDA RTIWESKIL

Best Arabidopsis Sequence Match ( AT1G22640.1 )
(BLAST)

001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH

Arabidopsis Description

MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.