Factsheet for Bra000453.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83327	Canola	nucleus	93.35	99.72
KRH37017	Soybean	nucleus	38.83	43.71
KRH11988	Soybean	nucleus	38.3	43.64
KRH50769	Soybean	nucleus	38.56	43.03
KRH02323	Soybean	nucleus	39.36	42.29
Bra000680.1-P	Field mustard	nucleus	25.0	41.96
AT3G62610.1	Thale cress	nucleus	37.77	41.4
TraesCS1D01G021700.1	Wheat	nucleus	32.45	38.85
Bra017685.1-P	Field mustard	nucleus	26.86	37.27
GSMUA_AchrUn_...	Banana	nucleus	31.38	36.88
Bra039395.1-P	Field mustard	nucleus	24.2	36.26
Bra004456.1-P	Field mustard	nucleus	35.11	36.16
TraesCS1B01G023400.1	Wheat	nucleus	30.85	36.14
TraesCS4A01G118400.1	Wheat	nucleus	33.24	36.13
TraesCS4B01G186000.1	Wheat	nucleus	33.24	36.13
HORVU4Hr1G054420.3	Barley	nucleus	32.45	35.88
TraesCS1B01G005200.1	Wheat	nucleus	31.65	35.84
TraesCS4D01G187100.1	Wheat	nucleus	32.98	35.84
TraesCS1B01G049700.1	Wheat	nucleus	30.59	35.83
Os01t0305900-01	Rice	nucleus	30.05	35.65
Bra010736.1-P	Field mustard	nucleus	26.6	35.34
Bra023486.1-P	Field mustard	nucleus	17.55	35.11
Bra008740.1-P	Field mustard	nucleus	18.35	35.03
Bra024526.1-P	Field mustard	nucleus	25.0	34.94
Zm00001d028842_P001	Maize	nucleus	31.12	34.93
TraesCS1B01G023500.1	Wheat	nucleus	29.79	34.89
GSMUA_Achr5P21250_001	Banana	nucleus	29.79	34.89
Bra022602.1-P	Field mustard	nucleus	18.35	34.85
Bra037419.1-P	Field mustard	nucleus	31.65	34.69
Bra035532.1-P	Field mustard	nucleus	23.94	34.62
Bra011576.1-P	Field mustard	nucleus	26.33	34.49
Bra012337.1-P	Field mustard	nucleus	25.0	34.06
TraesCS1A01G021500.1	Wheat	nucleus	30.32	33.83
Zm00001d047671_P001	Maize	nucleus	30.85	33.72
Bra033572.1-P	Field mustard	nucleus	26.33	33.67
Bra036145.1-P	Field mustard	nucleus	30.85	33.43
TraesCS1D01G020900.1	Wheat	nucleus	30.05	33.33
Bra027423.1-P	Field mustard	nucleus	22.34	32.94
GSMUA_Achr8P10470_001	Banana	nucleus	32.18	32.61
OQU86782	Sorghum	nucleus	31.12	32.41
Bra029113.1-P	Field mustard	nucleus	17.02	32.16
EER92385	Sorghum	nucleus	30.05	31.74
Bra013055.1-P	Field mustard	nucleus	23.94	31.25
Zm00001d040621_P002	Maize	nucleus	29.26	31.07
VIT_05s0077g01360.t01	Wine grape	nucleus	30.59	30.03
Bra025311.1-P	Field mustard	nucleus	17.55	29.33
Bra039065.1-P	Field mustard	nucleus	14.89	28.14
Bra025589.1-P	Field mustard	nucleus	18.35	27.06

Protein Annotations

EnsemblPlants:Bra000453.1	EnsemblPlants:Bra000453.1-P	EnsemblPlantsGene:Bra000453	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF203	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000253FF33	UniProt:M4C8C5	MapMan:15.5.2.1	:	:

Description

AT2G47460 (E=7e-141) MYB12, ATMYB12, PFG1 | MYB12 (MYB DOMAIN PROTEIN 12); DNA binding / transcription activator/ transcription factor

Coordinates

chrA03:+:11190760..11193776

Molecular Weight (calculated)

42147.0 Da

IEP (calculated)

5.221

GRAVY (calculated)

-0.788

Length

376 amino acids

Sequence
(BLAST)

001: MGRAPCCEKV GIKRGRWTAE EDQILSSYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TLEEEELVVK LHSTLGNRWS LIASHLPGRT
101: DNEIKNYWNS HLRRKLHNFI IRKPSISHNV PDVVINAPPR SPRPPTKRRP GRTSRSTMKP KTHHANIRKM KKTSEPPEPE ASAAVKAGEE TLMMELNGAE
201: AELGPCNYYV TCHEGGACRN NNNNNSIDGD KGVSSFDEDI IDLLLDESAP SHVLTSCGGN AELNHLGDSE EAKRSSEILN QESIDCLQSC PSMESFLNYE
301: HQVNNNAFTD EFIDWDCVWQ QGDDNNIFDE KEGSDSMVSW LLDGEDEATI GKSNCENSGE PLDHDEENAL VAWLLS

Best Arabidopsis Sequence Match ( AT2G47460.1 )
(BLAST)

001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S

Arabidopsis Description

MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.