Factsheet for Os01t0305900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94424	Soybean	nucleus	20.19	69.57
Zm00001d040621_P002	Maize	nucleus	65.93	59.04
OQU86782	Sorghum	nucleus	65.3	57.34
GSMUA_AchrUn_...	Banana	nucleus	40.69	40.31
GSMUA_Achr8P10470_001	Banana	nucleus	44.8	38.27
PGSC0003DMT400011167	Potato	nucleus	32.18	37.78
Solyc06g009710.2.1	Tomato	nucleus	34.07	36.36
Os09t0538400-01	Rice	extracellular	28.08	35.46
AT5G49330.1	Thale cress	nucleus	38.17	35.38
AT3G62610.1	Thale cress	nucleus	38.17	35.28
KRH31822	Soybean	nucleus	37.85	35.09
KRH69237	Soybean	nucleus	41.01	35.04
Bra037419.1-P	Field mustard	nucleus	37.85	34.99
PGSC0003DMT400018841	Potato	nucleus	33.44	34.98
Solyc12g049350.1.1	Tomato	nucleus	31.86	34.47
Os05t0429900-01	Rice	nucleus	27.76	33.85
VIT_07s0005g01210.t01	Wine grape	nucleus	39.12	33.79
Bra036145.1-P	Field mustard	nucleus	36.59	33.43
GSMUA_Achr5P21250_001	Banana	nucleus	33.44	33.02
KRH50769	Soybean	nucleus	34.7	32.64
AT2G47460.1	Thale cress	nucleus	38.17	32.61
Solyc01g079620.2.1	Tomato	nucleus	34.7	32.54
KRG96503	Soybean	nucleus	36.28	32.49
KRH11988	Soybean	nucleus	33.75	32.42
Os01t0874300-01	Rice	extracellular, nucleus	29.34	32.4
KRH37017	Soybean	nucleus	34.07	32.34
KRH68241	Soybean	nucleus	36.59	32.31
Os01t0695900-01	Rice	nucleus	27.76	32.0
KRH02323	Soybean	nucleus	35.33	32.0
PGSC0003DMT400023322	Potato	nucleus	36.28	31.68
Os11t0180900-00	Rice	nucleus	28.08	30.17
Bra000453.1-P	Field mustard	nucleus	35.65	30.05
VIT_05s0077g01360.t01	Wine grape	nucleus	35.33	29.24
Bra004456.1-P	Field mustard	nucleus	32.81	28.49
CDY27486	Canola	plastid	8.83	11.86

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:4323911	ProteinID:BAB20661.1	ProteinID:BAB64029.1	ProteinID:BAS71749.1
ProteinID:EEE54417.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	GO:GO:0045893	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	EnsemblPlantsGene:Os01g0305900	EnsemblPlants:Os01t0305900-01	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF595	UniProt:Q9FP39	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000009CD9F
RefSeq:XP_015628164.1	SEG:seg	:	:	:	:

Description

Similar to R2R3 Myb transcription factor MYB-IF35. (Os01t0305900-01)

Coordinates

chr1:+:11350507..11356863

Molecular Weight (calculated)

33648.1 Da

IEP (calculated)

5.469

GRAVY (calculated)

-0.732

Length

317 amino acids

Sequence
(BLAST)

001: MGRAPCCEKV GLRRGRWTKE EDEKLARYIR ENGEGAWRSM PKNAGLLRCG KSCRLRWINY LRADLKRGNI SPQEEDIILN LHATLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKGYEFL RGGGGGAVVD VDLSKLPGGG KRRGGRTGRS SSGKEKTRTK EKDKAPAPEA AHNDDGGGGG GGGIDNVSAA SHSHREEQAQ
201: ASASGLTSDG LEEGPLGLSE EMVSGPVGPV SPKPEVGQDG SSAESGCCGP SGSSGPTEAV GQDMGDKSMD WDLVGLDDGF ANDDMWGSLS WDYGELVGPD
301: GVHQGEVLSD LFFLGNL

Best Arabidopsis Sequence Match ( AT2G47460.1 )
(BLAST)

001: MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY LRSDLKRGNI TPEEEELVVK LHSTLGNRWS LIAGHLPGRT
101: DNEIKNYWNS HLSRKLHNFI RKPSISQDVS AVIMTNASSA PPPPQAKRRL GRTSRSAMKP KIHRTKTRKT KKTSAPPEPN ADVAGADKEA LMVESSGAEA
201: ELGRPCDYYG DDCNKNLMSI NGDNGVLTFD DDIIDLLLDE SDPGHLYTNT TCGGDGELHN IRDSEGARGF SDTWNQGNLD CLLQSCPSVE SFLNYDHQVN
301: DASTDEFIDW DCVWQEGSDN NLWHEKENPD SMVSWLLDGD DEATIGNSNC ENFGEPLDHD DESALVAWLL S

Arabidopsis Description

MYB12Transcription factor MYB12 [Source:UniProtKB/Swiss-Prot;Acc:O22264]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.