Factsheet for Os05t0429900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G074260.1	Barley	nucleus	79.23	82.07
TraesCS1B01G279400.1	Wheat	nucleus	77.69	81.78
TraesCS1A01G268800.1	Wheat	nucleus	76.54	80.57
TraesCS1D01G268900.1	Wheat	nucleus	76.15	80.16
GSMUA_AchrUn_...	Banana	nucleus	45.38	79.19
Zm00001d038338_P001	Maize	nucleus	71.54	72.09
GSMUA_Achr2P20600_001	Banana	nucleus	48.08	71.43
GSMUA_Achr3P22200_001	Banana	nucleus	58.46	70.05
KXG22070	Sorghum	nucleus	70.0	69.47
GSMUA_Achr5P26000_001	Banana	nucleus	52.31	64.76
GSMUA_Achr6P07260_001	Banana	mitochondrion	48.46	63.32
Os01t0874300-01	Rice	extracellular, nucleus	69.23	62.72
GSMUA_Achr6P25420_001	Banana	nucleus	56.92	62.45
Zm00001d010201_P001	Maize	nucleus	59.23	61.85
GSMUA_Achr8P32480_001	Banana	nucleus	46.54	60.5
GSMUA_Achr10P...	Banana	nucleus	49.23	58.99
GSMUA_Achr5P17010_001	Banana	nucleus	53.85	58.09
AT1G35515.1	Thale cress	nucleus	46.92	57.55
CDX90721	Canola	nucleus	48.08	55.8
Bra000680.1-P	Field mustard	nucleus	48.08	55.8
Os09t0538400-01	Rice	extracellular	53.85	55.78
GSMUA_Achr9P08600_001	Banana	nucleus	57.31	54.78
CDY05057	Canola	nucleus	47.69	54.63
Solyc06g065100.2.1	Tomato	nucleus	57.31	53.41
AT4G09460.1	Thale cress	nucleus	48.46	53.39
PGSC0003DMT400080427	Potato	nucleus	56.92	51.93
Os11t0180900-00	Rice	nucleus	58.08	51.19
VIT_07s0130g00040.t01	Wine grape	nucleus	56.15	50.34
GSMUA_Achr6P12930_001	Banana	nucleus	52.69	47.9
KRH54016	Soybean	nucleus	55.38	47.84
KRH63931	Soybean	nucleus	55.38	47.68
Os01t0695900-01	Rice	nucleus	34.62	32.73
Os01t0305900-01	Rice	nucleus	33.85	27.76

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:9266213	ProteinID:AAV59423.1	EMBL:AK066834	EMBL:AK099108
EMBL:AK104053	ProteinID:BAH93167.1	ProteinID:BAS94151.1	EMBL:EU837246	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	EnsemblPlantsGene:Os05g0429900	EnsemblPlants:Os05t0429900-01	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF617	UniProt:Q5TKI8	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00003B0E96	RefSeq:XP_015638107.1	SEG:seg	:	:

Description

R2R3-MYBSimilar to MybHv5 (Fragment). (Os05t0429900-01)

Coordinates

chr5:-:21099467..21100588

Molecular Weight (calculated)

28352.7 Da

IEP (calculated)

8.895

GRAVY (calculated)

-0.608

Length

260 amino acids

Sequence
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDQRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY LRPDLKRGNF TDDEDELIIR LHSLLGNKWS LIAGQLPGRT
101: DNEIKNYWNT HIKRKLLARG IDPQTHRPLL SGGDGIAASN KAAPPPPHPI SVPAKAAAAA IFAVAKPPPP PRPVDSSDDG CRSSSGTTST GEPRCPDLNL
201: ELSVGPTPSS PPAETPTSAR PVCLCYHLGF RGGEACSCQA DSKGPHEFRY FRPLEQGQYI

Best Arabidopsis Sequence Match ( AT4G09460.1 )
(BLAST)

001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL

Arabidopsis Description

MYB6Transcription repressor MYB6 [Source:UniProtKB/Swiss-Prot;Acc:Q38851]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.