Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 45.78 | 76.51 |
| GSMUA_Achr2P20600_001 | Banana | nucleus | 49.4 | 70.29 |
| GSMUA_Achr5P26000_001 | Banana | nucleus | 51.81 | 61.43 |
| Zm00001d038338_P001 | Maize | nucleus | 63.05 | 60.85 |
| TraesCS1D01G268900.1 | Wheat | nucleus | 59.44 | 59.92 |
| TraesCS1B01G279400.1 | Wheat | nucleus | 59.44 | 59.92 |
| GSMUA_Achr10P... | Banana | nucleus | 51.81 | 59.45 |
| HORVU1Hr1G074260.1 | Barley | nucleus | 59.84 | 59.36 |
| Os05t0429900-01 | Rice | nucleus | 61.85 | 59.23 |
| Zm00001d022628_P001 | Maize | nucleus | 51.81 | 59.17 |
| KXG22070 | Sorghum | nucleus | 62.25 | 59.16 |
| GSMUA_Achr3P22200_001 | Banana | nucleus | 51.41 | 58.99 |
| GSMUA_Achr6P07260_001 | Banana | mitochondrion | 46.99 | 58.79 |
| TraesCS1A01G268800.1 | Wheat | nucleus | 58.23 | 58.7 |
| Zm00001d012255_P001 | Maize | nucleus | 58.63 | 58.17 |
| GSMUA_Achr8P32480_001 | Banana | nucleus | 46.59 | 58.0 |
| Zm00001d041853_P001 | Maize | nucleus | 52.61 | 57.96 |
| Zm00001d042665_P001 | Maize | nucleus | 59.04 | 56.11 |
| GSMUA_Achr6P25420_001 | Banana | nucleus | 52.61 | 55.27 |
| AT1G35515.1 | Thale cress | nucleus | 45.78 | 53.77 |
| Zm00001d032024_P001 | Maize | nucleus | 53.41 | 52.36 |
| GSMUA_Achr5P17010_001 | Banana | nucleus | 50.6 | 52.28 |
| CDX90721 | Canola | nucleus | 46.59 | 51.79 |
| Bra000680.1-P | Field mustard | nucleus | 46.59 | 51.79 |
| AT4G09460.1 | Thale cress | nucleus | 48.19 | 50.85 |
| CDY05057 | Canola | nucleus | 46.18 | 50.66 |
| Zm00001d053220_P001 | Maize | nucleus | 52.61 | 50.38 |
| GSMUA_Achr9P08600_001 | Banana | nucleus | 52.61 | 48.16 |
| Zm00001d006236_P002 | Maize | nucleus | 52.61 | 47.99 |
| Zm00001d004744_P001 | Maize | nucleus | 51.0 | 46.18 |
| Solyc06g065100.2.1 | Tomato | nucleus | 51.0 | 45.52 |
| Zm00001d053060_P001 | Maize | nucleus | 52.61 | 45.49 |
| VIT_07s0130g00040.t01 | Wine grape | nucleus | 52.61 | 45.17 |
| PGSC0003DMT400080427 | Potato | nucleus | 51.0 | 44.56 |
| KRH63931 | Soybean | nucleus | 53.01 | 43.71 |
| KRH54016 | Soybean | nucleus | 52.61 | 43.52 |
| GSMUA_Achr6P12930_001 | Banana | nucleus | 49.4 | 43.01 |
| Zm00001d011645_P001 | Maize | nucleus | 35.34 | 38.26 |
| Zm00001d044975_P001 | Maize | nucleus | 32.93 | 30.15 |
| Zm00001d037118_P001 | Maize | nucleus | 32.13 | 29.3 |
| Zm00001d028842_P001 | Maize | nucleus | 34.94 | 25.97 |
| Zm00001d047671_P001 | Maize | nucleus | 34.94 | 25.29 |
| Zm00001d040621_P002 | Maize | nucleus | 35.34 | 24.86 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100384181 | MapMan:15.5.2.1 | ProteinID:AQK93616.1 | EMBL:BT069411 | UniProt:C0PM92 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF617 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000195D21E | EnsemblPlantsGene:Zm00001d010201 | EnsemblPlants:Zm00001d010201_P001 | EnsemblPlants:Zm00001d010201_T001 |
| SEG:seg | : | : | : | : | : |
Description
MYB-transcription factor 25Transcription repressor MYB6
Coordinates
chr8:+:103881482..103882231
Molecular Weight (calculated)
27182.2 Da
IEP (calculated)
8.692
GRAVY (calculated)
-0.533
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKG HTNKGAWTKE EDERLVAYIR SHGEGCWRSL PSAAGLLRCG KSCRLRWMNY LRPDLKRGNF TDDEDELIIR LHALLGNKFV SRLPSVDETA
101: SFFSVSTFIF STALPDVTRR ARRWSLIAGQ LPGRTDNEIK NYWNTHIKRK LLARGIDPHA HHRPQALHHV AAAALVPAPA AKPKPKPAES SDDGGRSSCS
201: CSGSGSSAGE PRCPDLNLDL SVGPPDAPTS PPPPCLCHRA WEACGCQAG
101: SFFSVSTFIF STALPDVTRR ARRWSLIAGQ LPGRTDNEIK NYWNTHIKRK LLARGIDPHA HHRPQALHHV AAAALVPAPA AKPKPKPAES SDDGGRSSCS
201: CSGSGSSAGE PRCPDLNLDL SVGPPDAPTS PPPPCLCHRA WEACGCQAG
001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
Arabidopsis Description
MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.