Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d019170_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38620.1 | Zm00001d019170_P001 | AT4G09820.1 | 15361138 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14116 | Sorghum | nucleus | 86.61 | 85.27 |
| Zm00001d053220_P001 | Maize | nucleus | 81.1 | 79.23 |
| Zm00001d022628_P001 | Maize | nucleus | 65.35 | 76.15 |
| TraesCS7A01G272100.1 | Wheat | nucleus | 70.47 | 74.58 |
| HORVU7Hr1G057410.1 | Barley | nucleus | 69.29 | 73.95 |
| TraesCS7B01G169900.1 | Wheat | nucleus | 68.11 | 73.62 |
| TraesCS7D01G272400.1 | Wheat | nucleus | 67.72 | 73.5 |
| GSMUA_Achr1P02420_001 | Banana | nucleus | 55.51 | 72.31 |
| KRH60702 | Soybean | nucleus | 58.27 | 70.48 |
| VIT_03s0038g02310.t01 | Wine grape | nucleus | 64.57 | 65.34 |
| KRH51400 | Soybean | nucleus | 58.66 | 63.4 |
| Zm00001d006236_P002 | Maize | nucleus | 66.54 | 61.9 |
| KRH29280 | Soybean | nucleus | 58.66 | 60.57 |
| Solyc01g111500.2.1 | Tomato | nucleus | 59.45 | 59.92 |
| PGSC0003DMT400015803 | Potato | nucleus | 59.45 | 59.45 |
| KRH24301 | Soybean | nucleus | 58.66 | 58.89 |
| Solyc10g055410.1.1 | Tomato | nucleus | 61.42 | 57.14 |
| PGSC0003DMT400034372 | Potato | nucleus | 60.24 | 57.09 |
| GSMUA_Achr4P25710_001 | Banana | nucleus | 42.91 | 56.77 |
| Zm00001d038338_P001 | Maize | nucleus | 55.91 | 55.04 |
| Zm00001d012255_P001 | Maize | nucleus | 54.33 | 54.98 |
| Zm00001d041853_P001 | Maize | nucleus | 48.43 | 54.42 |
| Zm00001d010201_P001 | Maize | nucleus | 52.36 | 53.41 |
| Zm00001d042665_P001 | Maize | nucleus | 54.72 | 53.05 |
| AT4G38620.1 | Thale cress | nucleus | 57.48 | 51.77 |
| CDX90285 | Canola | nucleus | 57.48 | 51.59 |
| Bra010736.1-P | Field mustard | nucleus | 57.09 | 51.24 |
| Bra033572.1-P | Field mustard | nucleus | 57.09 | 49.32 |
| CDX72743 | Canola | nucleus | 57.09 | 49.32 |
| CDY22416 | Canola | nucleus | 57.09 | 49.32 |
| CDY52797 | Canola | nucleus | 48.82 | 48.06 |
| Zm00001d004744_P001 | Maize | nucleus | 51.97 | 48.0 |
| CDY12092 | Canola | nucleus | 56.69 | 47.37 |
| Zm00001d053060_P001 | Maize | nucleus | 53.15 | 46.88 |
| Zm00001d011645_P001 | Maize | nucleus | 35.04 | 38.7 |
| Zm00001d037118_P001 | Maize | nucleus | 35.04 | 32.6 |
| Zm00001d044975_P001 | Maize | nucleus | 34.65 | 32.35 |
| Zm00001d028842_P001 | Maize | nucleus | 35.43 | 26.87 |
| Zm00001d047671_P001 | Maize | nucleus | 36.22 | 26.74 |
| Zm00001d040621_P002 | Maize | nucleus | 36.61 | 26.27 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:103643223 | MapMan:15.5.2.1 | UniProt:A0A1D6KN59 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | ProteinID:ONM04257.1 | PFAM:PF00249 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF741 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000221EECB | EnsemblPlantsGene:Zm00001d032024 | EnsemblPlants:Zm00001d032024_P001 | EnsemblPlants:Zm00001d032024_T001 | SEG:seg | : |
Description
myb transcription factor38 myb transcription factor38
Coordinates
chr1:+:209721047..209722437
Molecular Weight (calculated)
27505.1 Da
IEP (calculated)
8.860
GRAVY (calculated)
-0.386
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRSPCCEKA HTNRGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY LRPDLKRGNF TADEDDLIVK LHSLLGNKWS LIAARLPGRT
101: DNEIKNYWNT HVRRKLLGRG IDPVTHRPIA ADAVTVTTVS FQPSPSAAAA AAAEAEATAA KAPRCPDLNL DLCISPPCQQ QEEEEEVDLK PSAAVVKREV
201: LLGGRGHGHG GALCFGCSLG VQKGAPGCSC SSSNGHRCLG LRGGMLDFRG LKMK
101: DNEIKNYWNT HVRRKLLGRG IDPVTHRPIA ADAVTVTTVS FQPSPSAAAA AAAEAEATAA KAPRCPDLNL DLCISPPCQQ QEEEEEVDLK PSAAVVKREV
201: LLGGRGHGHG GALCFGCSLG VQKGAPGCSC SSSNGHRCLG LRGGMLDFRG LKMK
001: MGRSPCCEKA HMNKGAWTKE EDQLLVDYIR KHGEGCWRSL PRAAGLQRCG KSCRLRWMNY LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
101: DNEIKNYWNT HIKRKLLSRG IDPNSHRLIN ESVVSPSSLQ NDVVETIHLD FSGPVKPEPV REEIGMVNNC ESSGTTSEKD YGNEEDWVLN LELSVGPSYR
201: YESTRKVSVV DSAESTRRWG SELFGAHESD AVCLCCRIGL FRNESCRNCR VSDVRTH
Arabidopsis Description
MYB3MYB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WFN1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.